[petsc-users] petsc and goto blas

2011-08-31 Thread Jed Brown
On Wed, Aug 31, 2011 at 00:29, David Fuentes wrote: > when using the "--download-mpi=yes" option on a small cluster, > are the configure scripts able to detect an infiniband switch and > configure/install mpich to communicate over it accordingly ? > MPICH2 does not use InfiniBand, you would use

[petsc-users] petsc and goto blas

2011-08-31 Thread David Fuentes
thanks. ended up being something w/ the mpi compilers I was using. difficult to track down. works with the --download-mpi=yes petsc config option though! when using the "--download-mpi=yes" option on a small cluster, are the configure scripts able to detect an infiniband switch and configure/inst

[petsc-users] petsc and goto blas

2011-08-29 Thread Barry Smith
On Aug 29, 2011, at 5:49 PM, David Fuentes wrote: > Is there any reason why petsc compiled to link with goto blas shared > libraries would not run multi-threaded by default ? We don't do anything to prevent it from using multi-threaded. Te first thing I would suggest is make sure it truly is

[petsc-users] petsc and goto blas

2011-08-29 Thread David Fuentes
Is there any reason why petsc compiled to link with goto blas shared libraries would not run multi-threaded by default ? I've set (OMP/GOTO)_NUM_THREADS=8 but when I call dgemm from PETSc I can't seem to get it to run on multiple cores (<= 100% cpu usage from top). I checked and the test routines