On 29 Jul 2015, at 20:57, John Baublitz jb...@bu.edu wrote:
Thank you very much for the support. Unfortunately I have tried using this
GIFTI file that it outputs with FreeSurfer as an overlay and surface
Both at the same time?
and it throws errors for all FreeSurfer utils and even AFNI
Thank you very much for the support. Unfortunately I have tried using this
GIFTI file that it outputs with FreeSurfer as an overlay and surface and it
throws errors for all FreeSurfer utils and even AFNI utils. FreeSurfer
mris_convert outputs:
mriseadGIFTIfile: mris is NULL! found when parsing
On 23 Jul 2015, at 17:38, Nick Oosterhof n.n.ooster...@googlemail.com wrote:
is there a utility to convert from SUMA surface files to FreeSurfer surface
files included in PyMVPA?
ConvertDset (included with AFNI) can convert between NIML and GIFTI, and
mris_convert (included with
Thank you for the quick response. I tried outputting a surface file file
before using both niml.write() and surf.write() as my lab would prefer to
visualize the results on the surface. I mentioned this in a previous email
and was told that I should be using niml.write() and visualize using SUMA.
I
On 07/23/2015 06:45 AM, Nick Oosterhof wrote:
On 22 Jul 2015, at 20:11, John Baublitz jb...@bu.edu wrote:
I have been battling with a surface searchlight that has been taking 6 to 8
hours for a small dataset. It outputs a usable analysis but the time it
takes is concerning given that our
On 23 Jul 2015, at 17:43, John Baublitz jb...@bu.edu wrote:
The error upon executing suma -spec sl.dset is:
Error SUMA_Read_SpecFile: Your spec file contains uncommented gibberish:
AFNI_dataset
Please deal with it.
Error SUMA_Engine: Error in SUMA_Read_SpecFile.
You cannot use NIML
On 23 Jul 2015, at 16:46, Christopher J Markiewicz effig...@bu.edu wrote:
To clarify, are you saying that using SurfaceVerticesQueryEngine runs
the classifiers (or other measure) on sets of vertices, not sets of
voxels?
No, the *input* for classification (or other measure) is from voxels
On 23 Jul 2015, at 16:47, John Baublitz jb...@bu.edu wrote:
Thank you for the quick response. I tried outputting a surface file file
before using both niml.write() and surf.write() as my lab would prefer to
visualize the results on the surface. I mentioned this in a previous email
and
The error upon executing suma -spec sl.dset is:
Error SUMA_Read_SpecFile: Your spec file contains uncommented gibberish:
AFNI_dataset
Please deal with it.
Error SUMA_Engine: Error in SUMA_Read_SpecFile.
I followed the tutorial on how to generate this so I'm not sure if this is
a bug or maybe a
On 22 Jul 2015, at 20:11, John Baublitz jb...@bu.edu wrote:
I have been battling with a surface searchlight that has been taking 6 to 8
hours for a small dataset. It outputs a usable analysis but the time it takes
is concerning given that our lab is looking to use even higher resolution
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