Hi, ports@:
Here is a patch for biology/bioperl to update to 1.7.8,
it build well and pass all tests on amd64-6.8 system.
Five ports depends on biology/bioperl, all build well
and pass all tests on amd64-6.8 system with this patch.
wen
Index: Makefile
===================================================================
RCS file: /cvs/ports/biology/bioperl/Makefile,v
retrieving revision 1.22
diff -u -p -r1.22 Makefile
--- Makefile 25 Aug 2020 23:56:31 -0000 1.22
+++ Makefile 6 Feb 2021 14:58:41 -0000
@@ -2,7 +2,7 @@
COMMENT= perl tools for bioinformatics
-DISTNAME= BioPerl-1.7.7
+DISTNAME= BioPerl-1.7.8
PKGNAME= ${DISTNAME:L}# No p5-prefix here.
CATEGORIES= biology
Index: distinfo
===================================================================
RCS file: /cvs/ports/biology/bioperl/distinfo,v
retrieving revision 1.6
diff -u -p -r1.6 distinfo
--- distinfo 25 Aug 2020 23:56:31 -0000 1.6
+++ distinfo 6 Feb 2021 14:58:41 -0000
@@ -1,2 +1,2 @@
-SHA256 (BioPerl-1.7.7.tar.gz) = cw4r04t1UL9rvVvKUNAZpwzKUUVZcCwTiddw/2nP8bs=
-SIZE (BioPerl-1.7.7.tar.gz) = 7532782
+SHA256 (BioPerl-1.7.8.tar.gz) = xJCjvncV6m5DBe/ZcQ5e2rgtq8Vf14a2UFtVCjDXFzg=
+SIZE (BioPerl-1.7.8.tar.gz) = 7527658
Index: pkg/PLIST
===================================================================
RCS file: /cvs/ports/biology/bioperl/pkg/PLIST,v
retrieving revision 1.6
diff -u -p -r1.6 PLIST
--- pkg/PLIST 25 Aug 2020 23:56:31 -0000 1.6
+++ pkg/PLIST 6 Feb 2021 14:58:41 -0000
@@ -428,7 +428,6 @@ ${P5SITE}/Bio/SeqIO/gbdriver.pm
${P5SITE}/Bio/SeqIO/gbxml.pm
${P5SITE}/Bio/SeqIO/gcg.pm
${P5SITE}/Bio/SeqIO/genbank.pm
-${P5SITE}/Bio/SeqIO/interpro.pm
${P5SITE}/Bio/SeqIO/kegg.pm
${P5SITE}/Bio/SeqIO/largefasta.pm
${P5SITE}/Bio/SeqIO/locuslink.pm
@@ -960,7 +959,6 @@ ${P5SITE}/BioPerl.pm
@man man/man3p/Bio::SeqIO::gbxml.3p
@man man/man3p/Bio::SeqIO::gcg.3p
@man man/man3p/Bio::SeqIO::genbank.3p
-@man man/man3p/Bio::SeqIO::interpro.3p
@man man/man3p/Bio::SeqIO::kegg.3p
@man man/man3p/Bio::SeqIO::largefasta.3p
@man man/man3p/Bio::SeqIO::locuslink.3p
