[sent earlier directly to Kei, but we though it might be of general
interest]
Some comments on the NeuronDB modeling:
If there are textual definitions associated with the classes, it
would be helpful to include them as rdf:comments. If not, consider
going to
some reference and choosing
That would be wonderful, Luis.
Cheers,
Bill
On Mar 13, 2007, at 6:34 PM, Luis Marenco wrote:
I'll annotate semantically all the EAV/CR elements in SenseLab.
This way the
next time the OWL convertion routine will be describe the
relationships more
accurately.
e.g.:
http://senselab.med.y
I'll annotate semantically all the EAV/CR elements in SenseLab. This way the
next time the OWL convertion routine will be describe the relationships more
accurately.
e.g.:
http://senselab.med.yale.edu/senselab/site/dbMeta/eavMD_Attributes.asp?at=71
Luis Marenco
Yale Cen
Thanks Matthias-- I've included them...(everyone should feel free to edit the
page as they see fit!)
very interesting story regarding the heart valve 5HT-2b connection...
Eric
-Original Message-
From: [EMAIL PROTECTED] on behalf of Matthias Samwald
Sent: Tue 3/13/2007 3:25 PM
To: publ
Two things I would add:
DONEPEZIL (http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=3152) One of
the most popular and modern Acetylcholineesterase inhibitors in Alzheimers.
Also included in one of the Brainpharm demos, if I remember correctly.
MEMANTINE (already listed as a Parkinson's
I've included sometherapeutic candidates from PubChem at...
http://esw.w3.org/topic/HCLSIG/DEMO/ChemicalAgents
These are linked from a bullet in...
http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Demo_Thoughts
Eric
We will fix the broken OWL:import and re-release promptly
Tim
On TuesdayMar 13, 2007, at 10:20 AM, [EMAIL PROTECTED] wrote:
Ontowiki:
I was asked to assess the usability of Ontowiki [1,2] for the
purposes of our Demo. I can say that it appears to be useful for
the visualisation (and not
> We have a free tool called COE which can display
> any OWL ontology graphically and has no trouble
> with class hierarchies. It also supports editing
> and composing ontologies in the graphical
> interface. You can get it from
> http://cmap.ihmc.us/coe/. I suggest reading the
> manual first.
T
Very nice work and much appreciated.
Mark Montgomery
- Original Message -
From: <[EMAIL PROTECTED]>
To:
Cc: <[EMAIL PROTECTED]>
Sent: Tuesday, March 13, 2007 7:55 AM
Subject: BAMS names and initial model (instance style)
Per (some of) my action items, I put on the wiki demo page
Per (some of) my action items, I put on the wiki demo page:
http://esw.w3.org/topic/HCLS/HCLSIG_DemoHomePage_HCLSIG_Demo
the lists of BAMS brain part, cell, and molecule names, and the initial
instance style model with some data. Even though the eventual knowledge base
will likely look nothing
Ontologies that are solely based on classes
(like the NeuronDB ontology) cannot be usefully
visualised / edited with Ontowiki, however. As
far as I know, this is true for all other
RDF/OWL browsers currently available.
We have a free tool called COE which can display
any OWL ontology grap
Matthias,
May I propose that you give a demo of OntoWiki at one of the upcoming F2Fs?
---Vipul
> -Original Message-
> From: [EMAIL PROTECTED] [mailto:public-semweb-lifesci-
> [EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED]
> Sent: Tuesday, March 13, 2007 10:20 AM
> To: public-semweb-li
Ontowiki:
I was asked to assess the usability of Ontowiki [1,2] for the purposes of our
Demo. I can say that it appears to be useful for the visualisation (and not to
forget: for editing) most of the data we are dealing with in our planned demo,
as long as most of the information is expressed
Matthias,
These are great suggestions below. I have the following questions/suggestions.
Are the naming suggestions based on aligning to a particular (upper) ontology,
e.g., OBO/BFO/DOLCE? The reason, I bring this up is that once we start
converting our data sets into RDF, it will be great tha
Alan,
Since CA1 pyramidal neuron was mentioned in the AD/PD use case, I just
wonder at least for educational purposes (especially those who are not
neuroscientists) to see the image or even some animation (aha, cool,
etc) of such a neuron. Also, the neuron morpholoy may have research
value a
> We just finished exporting the NeuronDB of Senselab into RDF and OWL.
>
> http://neuroweb.med.yale.edu/senselab/
Great!
Here are some thoughts I had while browsing through the OWL version (I post
them in public so others do not give you redundant feedback):
According to the Pellet reasone
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