BioRDF meeting minutes 2007-06-11

2007-06-11 Thread samwald
The meeting minutes can be found at http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Meetings/2007-06-11_Conference_Call or alternatively http://tinyurl.com/328nxe cheers, Matthias Samwald -- Yale Center for Medical Informatics, New Haven / Section on Medical Expert and Knowledge-Based

Re: Evidence

2007-06-11 Thread Adrian Walker
Hi Again Matt -- You wrote... It is also not "definitely necessary to relate hypotheses to evidence with probability" (although it may be useful). There are a load of other techniques that don't use probability: e.g. Wigmore Charts (from 1930's onwards) and more recently, non-monotonic logical t

Status of HCLS Demo servers

2007-06-11 Thread Alan Ruttenberg
Today we will pack up the demo machines that were loaned to us from HP. so hcls1 and hcls2 will be down, for at least a little while. We have been offered a server hosted by Amit Sheth's group and should be able to set this up hopefully this week or next. Another server will be purchased and

RE: Evidence

2007-06-11 Thread Kashyap, Vipul
> > inferences probably shouldn't be called evidence, but they are the > > reason that some data are considered evidence, and others not, [VK] Yes, but they do need to belong as "properties" of a generic evidence class as pointed out by Daniel Rubin, at least that's how it's used in certain clini

Re: Evidence

2007-06-11 Thread samwald
> inferences probably shouldn't be called evidence, but they are the > reason that some data are considered evidence, and others not, Exactly. That is why I would suggest to replace the evidence code 'inferred from genomic analysis' with the process 'genomic analysis (experimental procedure

Evidence

2007-06-11 Thread Matt Williams
I changed the subject line to make it more specific. I think that Evidence is a tricky, slippery subject. It seems to be both traces (i.e. records of something) and in many cases, inferences. Those inferences probably shouldn't be called evidence, but they are the reason that some data are co

RE: Reviewing the Banff demo ontology infrastructure

2007-06-11 Thread Kashyap, Vipul
> "Evidence" is important, but is complex. If evidence is from > collection of facts, then exactly how do those facts provide the > evidence (there are many types of analyses you can do on raw data to > produce evidence). So evidence is a function of the facts, the > analysis method, the method o

Re: Reviewing the Banff demo ontology infrastructure

2007-06-11 Thread Chimezie Ogbuji
On Sun, 2007-06-10 at 22:20 +0200, [EMAIL PROTECTED] wrote: > Reviewing the Banff demo ontology infrastructure > 1) What relations do we use to connect a biological entity with artificial > entities describing it, e.g. ‘protein records’, ‘sequence records’, ‘Pubmed > records’? I've been using t

Re: BioRDF Telcon

2007-06-11 Thread Kei Cheung
Hi Jonathan, Thanks for creating the document on URI's. Due to a meeting in Florida, I won't be able to make today's BioRDF TC. -Kei Eric Neumann wrote: +1 ! I've also added a reference to the Banff discussion on URI's. I plan to put this also on the agenda for the next HCLSIG TC (June

Re: BioRDF Telcon

2007-06-11 Thread Susie Stephens
Hi Jonathan, Minutes from previously meetings are posted at: http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Meetings Information about upcoming meetings is available at: http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup Cheers, Susie On 6/10/07, Jonathan Rees <[EMAIL PROTECTED]> wrote: When's

RE: BioRDF Telcon

2007-06-11 Thread Eric Neumann
+1 ! I've also added a reference to the Banff discussion on URI's. I plan to put this also on the agenda for the next HCLSIG TC (June 21). -Eric -Original Message- From: [EMAIL PROTECTED] on behalf of Jonathan Rees Sent: Mon 6/11/2007 6:09 AM To: public-semweb-lifesci@w3.org Subject: R

RE: Reviewing the Banff demo ontology infrastructure

2007-06-11 Thread Daniel Rubin
At 09:43 PM 6/10/2007, Kashyap, Vipul wrote: Matthias, Thanks for the well organized e-mail, This is clearly one area where the HCLSIG community can provide some feedback. Chimezie had similar constructs related to "Patient Records" in his POMR. Let's try to distill out some issues so that

Re: BioRDF Telcon

2007-06-11 Thread Jonathan Rees
I've prepared a status report on the "URI Best Practices" task and placed it here: http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Tasks/URI_Best_Practices/Status_2007-06-08 Some of this bears on my agendum for today's meeting, so if you get a chance please look it over before the meeting. Jonath