Working Drafts open for comment

2008-04-16 Thread M. Scott Marshall
Dear All, Two documents are published as draft and ready for comment: A description of the work done to build a prototype knowledgebase for the life sciences: http://www.w3.org/TR/hcls-kb/ A description of the conversion of Senselab databases to RDF/OWL: http://www.w3.org/TR/hcls-senselab/ Com

RE: An argument for bridging information models and ontologies at the syntactic level

2008-04-16 Thread Kashyap, Vipul
Ogbuji, Chimezie wrote: Dan, I've very familiar with the SOAP model. The primary motivation for my questions about assessment had more to do with distinguishing an action from data that is derived from it. This speaks directly

RE: An argument for bridging information models and ontologies at the syntactic level

2008-04-16 Thread Kashyap, Vipul
> [[[ > * Clinical care - what we do to the patient based on our > assessments of the pathophysology of the patient > * I'm not sure if Alan is deliberately saying that this > "clinical care" level addresses actions taken *based on* > assessments/observations, but that assessme

RE: An argument for bridging information models and ontologies at the syntactic level

2008-04-16 Thread Kashyap, Vipul
Thanks for the clarification Tom, Based on your discussion below, I would propose that first two aspects belong to the information model layer whereas the record of that care probably belongs to the implementation details/data types and structures of the information model? ___

RE: An argument for bridging information models and ontologies at the syntactic level

2008-04-16 Thread Kashyap, Vipul
IMHO, codes don't represent classes in some information model. An information model has classes like Observation, whose instances are clinical statements made by some entity (person or machine). I think information model is "meta" in the sense that its instances are statements

RE: An argument for bridging information models and ontologies at the syntactic level

2008-04-16 Thread Ogbuji, Chimezie
Hello, Dan. Comments inline below. I'll start with my general understanding of data and measurements and see if I can't converge on an answer to your question. By data, I mean anything that is captured in some (mostly electronic) medium and typically represents or is a proxy for some phenomenon

Re: An argument for bridging information models and ontologies at the syntactic level

2008-04-16 Thread Dan Russler
Hi Chimezie, It may be helpful to examine what "data" means and what "measurement" means. There is a kind of classification system that is used in medicine. The "process of living" includes many hundreds of thousands of sub-processes that must work in harmony for the individual to remain alive

AnatomyLens a semantic search engine on PubMed articles

2008-04-16 Thread Kavitha Srinivas
In the spirit of the HCLS Banff demo, AnatomyLens provides a search over annotations of PubMed articles and GOA annotations using the GO (gene ontology) and FMA (Foundational Model of Anatomy) ontologies. Here's a brief description: Anatomy Lens is a search engine that helps scientists hon