Re: 'Gene WIki' announced

2008-08-21 Thread Kei Cheung
Hi Nigam, Thanks for expressing NCBO's interest. Such Neuro/Bio-Wiki projects (including visualization) might be candidate projects within the BioRDF task force. It would be great if NCBO can participate to help promote harmonization of ontologies and URI's in the context of these Wiki projec

RE: 'Gene WIki' announced

2008-08-21 Thread Nigam Shah
Hi Kei, Wikis are certainly gaining ground. If there are ways in which NCBO can contribute ontology services to such projects, we would be very happy to help. We can start simple by promoting the use of ontology term URIs provided by BioPortal (see Mark's message from earlier today [8/21]). If m

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-21 Thread Kei Cheung
Paolo Romano wrote: At 11:31 21/08/2008, Phillip Lord wrote: > "KC" == Kei Cheung <[EMAIL PROTECTED]> writes: KC> If some journals are requiring raw data (e.g., microarray data) to be KC> submitted to a public data repository, I wonder if workflows that are KC> used to analyze th

Re: Towards a cyberinfrastructure for the biological sciences: correspondence

2008-08-21 Thread Kei Cheung
Hi Duncan, I was on the road today (and just connected to the Internet) so I missed the HCLS call earlier today. Thanks for taking the initiative of contacting the editors of Nature and drafting the letter. My name should be "Kei Cheung" (not "Kei Chung"). :-) I don't seem to be able to edi

NCBO releases BioPortal version 2.0 ontology repository

2008-08-21 Thread Mark Musen
The National Center for Biomedical Ontology (NCBO) is pleased to announce the release of BioPortal 2.0 — a Web-based application that serves as a “one-stop shop” for accessing and sharing biomedical ontologies. Users can browse and explore individual ontologies by navigating either a tree s

RE: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-21 Thread Carl Taswell
Apologies to anybody trying to reach me for omitting my contact information on my previous message. Please feel free to call me at the numbers below: Carl Taswell, MD, PhD 8 Gilly Flower Street Ladera Ranch, CA 92694 Tel: 949-481-3121 Mob: 916-616-4939 -Original Message- From: [EMAIL

SWANSIOC Telcon

2008-08-21 Thread Susie M Stephens
Here's the dial in information for tomorrow's SWANSIOC call. Cheers, Susie == Conference Details == * Date of Call: Friday August 22, 2008 * Time of Call: 11:00am Eastern Time * Dial-In #: +1.617.761.6200 (Cambridge, MA) * Dial-In #: +33.4.89.06.34.99 (Nice, France) * Dial-In #: +44.117.

Alternative IRC web client

2008-08-21 Thread Marshall, M.S.
If IRC hasn't worked out for you yet, please try: http://mibbit.com/ Apparently, you don't need a W3C account to use this web client. Please take a look at the teleconferencing details below, as they'll help make the call run smoothly, and allow you to ask questions. Cheers, Scott Teleco

Towards a cyberinfrastructure for the biological sciences: correspondence

2008-08-21 Thread Duncan Hull
Dear Kei On 20 Aug 2008, at 19:16, Kei Cheung wrote: It looks like there are a number of ways for commenting on the paper. Please let me know what you think. I suggest we participate in the wiki-experiment by drafting a correspondence article to the editors on the wiki. I've made a sta

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-21 Thread Paolo Romano
At 11:31 21/08/2008, Phillip Lord wrote: > "KC" == Kei Cheung <[EMAIL PROTECTED]> writes: KC> If some journals are requiring raw data (e.g., microarray data) to be KC> submitted to a public data repository, I wonder if workflows that are KC> used to analyze the data should also be su

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-21 Thread Phillip Lord
> "KC" == Kei Cheung <[EMAIL PROTECTED]> writes: KC> Peter Ansell wrote: >> Wiki's explicitly allow for a permanent link to a particular version of >> something. Hopefully an implementation of a wiki-like workflow editor >> online, will have similar characteristics so that you can sti