surprise absence next week

2009-04-02 Thread Eric Prud'hommeaux
i will be away from network for the week up april 6-10. (surprise!) i may be able to connect some in the mornings, but i can't promise. i will probably have cell coverage. -- -eric office: +1.617.258.5741 32-G528, MIT, Cambridge, MA 02144 USA mobile: +1.617.599.3509 (e...@w3.org) Feel free to f

Re: Reminder: Sci Discourse concall Friday Apr 3 11am-noon Boston time

2009-04-02 Thread Kei Cheung
Hi Tim, Unfortunately, I have a meeting conflict. I'll miss the call tomorrow. One big thought is how to make the HCLS task forces "tranlational" to each other (biological-clinical-pharmocological-patient). Cheers, -Kei Tim Clark wrote: Dear Colleagues: This is a reminder for the HCLS Sc

Re: Announcement: Bio2RDF 0.3 released

2009-04-02 Thread Peter Ansell
Hi all, I have made a few fixes and changes to the initial 0.3 release, and although I didn't announce 0.3.1 as I found some necessary improvements after releasing it, the 0.3.2 version has now been released [1]. A set of blog posts on the Bio2RDF blog [2] attempt to highlight some of the new feat

Reminder: Sci Discourse concall Friday Apr 3 11am-noon Boston time

2009-04-02 Thread Tim Clark
Dear Colleagues: This is a reminder for the HCLS Scientific Discourse Task concall for Apr 3 11am-noon Boston time (GMT-5). Our basic agenda for tomorrow is to plan the objectives for our breakout session at the upcoming HCLS F2F meeting, which is April 30 - May 1 in Cambridge at MIT. W

11th Protege Conference: Submission deadline extended

2009-04-02 Thread Samson Tu
Apologies for multiple postings. Please forward to interested colleagues and mailing lists. -- The 11th International Protege Conference June 23-26, 2009 University of

Re: blog: semantic dissonance in uniprot

2009-04-02 Thread Egon Willighagen
On Thu, Apr 2, 2009 at 5:35 PM, Michel_Dumontier wrote: >> Actually, I'd say OWL is to blame here... that is, the OWL class was >> not properly defined. > > Just to clarify - it's not OWL that's the problem. It's the > representation of Chemistry in a formal logic-based language where it > actuall

HCLS Telcon Minutes

2009-04-02 Thread Susie M Stephens
Minutes from the HCLS telcon are now available. http://esw.w3.org/topic/HCLSIG/Meetings/2009-04-02_Conference_Call Thanks to EricP for scribing. Susie

Pharma Ontology Minutes

2009-04-02 Thread Susie M Stephens
The minutes from the Pharma Ontology telcon are now available. http://esw.w3.org/topic/HCLSIG/PharmaOntology/Meetings/2009-04-02_Conference_Call Thanks to Colin for scribing. Cheers, Susie

RE: blog: semantic dissonance in uniprot

2009-04-02 Thread Michel_Dumontier
> -Original Message- > From: public-semweb-lifesci-requ...@w3.org [mailto:public-semweb- > lifesci-requ...@w3.org] On Behalf Of Egon Willighagen > Sent: Thursday, April 02, 2009 10:57 AM > To: Matthias Samwald > Cc: Phillip Lord; Oliver Ruebenacker; Pat Hayes; public-semweb-lifesci > Subj

Re: blog: semantic dissonance in uniprot

2009-04-02 Thread Egon Willighagen
On Tue, Mar 31, 2009 at 2:09 PM, Matthias Samwald wrote: >>> Reaction equations describe stochastic processes, that's why you can >>> have non-integer molecule numbers >> >> I think you can't have non-integer molecule numbers because it makes >> no chemical sense. Half a molecule is a whole molecu

Re: blog: semantic dissonance in uniprot

2009-04-02 Thread Egon Willighagen
On Tue, Mar 31, 2009 at 2:49 PM, Oliver Ruebenacker wrote: > On Tue, Mar 31, 2009 at 8:30 AM, Wacek Kusnierczyk > wrote: >> i'd agree that having non-integer *molecule numbers* sounds nonsense, >> but having non-integer *relative molecule numbers* certainly doesn't. >> in any case, the equation >

Re: HCLS Telcon

2009-04-02 Thread Egon Willighagen
Hi Scott (and others), On Thu, Apr 2, 2009 at 12:42 AM, M. Scott Marshall wrote: > Here's the reminder for Thursday's HCLS call. I will not be able to make it today. And I think I found which telcon's are most interesting to me (LODD and BioRDF), though several others have my interest too. Last

Re: blog: semantic dissonance in uniprot

2009-04-02 Thread Pat Hayes
On Apr 2, 2009, at 2:47 AM, Wacek Kusnierczyk wrote: Pat Hayes wrote: On Mar 31, 2009, at 7:49 AM, Oliver Ruebenacker wrote: What about this statement: "Two grams of hydrogen react with 16 grams of oxygen to 18 grams of water" If I were trying to do a professional job of 'ontologizing' t

Re: blog: semantic dissonance in uniprot

2009-04-02 Thread Wacek Kusnierczyk
Pat Hayes wrote: > > On Mar 31, 2009, at 7:49 AM, Oliver Ruebenacker wrote: > >> What about this statement: >> >> "Two grams of hydrogen react with 16 grams of oxygen to 18 grams of >> water" > > If I were trying to do a professional job of 'ontologizing' this, it > would be a formal rendering of