Re: Minimum information about a mutation

For more context, we are seeing supplementary data like in: http://www.nature.com/nature/journal/v463/n7278/suppinfo/nature08658.html (Supplementary Table 4) and in: http://www.nature.com/ng/journal/v43/n5/full/ng.810.html#/supplementary-information (Supplementary Table 2) The main difference i

RE: Minimum information about a mutation

hi chris, excellent answer. hi jim, i think one aspect of MIAMI-like specifications is that the technology that was used to discover the mutation and the protocols and raw datasets involved is a major focus so other researchers can evaluate the evidence for the mutation and perhaps reproduce the

Re: HCLS chartering/next steps Thur 26 May

Hi Eric, Sorry I won't be able to make the call either. It conflicts with provenance WG's weekly call. But I will keep an eye on the IRC. On 24/05/2011 04:04, Eric Prud'hommeaux wrote: LODD - curation of compounds, clinical trials and outcomes. I am a bit surprised to see this wording

Re: Minimum information about a mutation

Hi Jim, not specifically, but if you look at the MIBBI* portal (http://mibbi.org ), Chris here cc-ed also maintains. He says that there are relevant part in other checklists, namely MIAPE (for the assay descriptions), MIAPAR for reagents and TAP assays, MIPFE (and perhaps S

RE: HCLS chartering/next steps Thur 26 May

hi eric, thanks for all your hard work, it lets people like me nitpick from the corners. sorry i won't be able to make the teleconference. comments below. > Terminology - identifying and integrating identifiers for biological > processes, gross anatomy and medical procedures to promote >

Minimum information about a mutation

Does anyone know of a MIAME-like standard for what should be included in a dataset of amino acid-level mutations? Thanks, Jim -- Jim McCusker Programmer Analyst Krauthammer Lab, Pathology Informatics Yale School of Medicine james.mccus...@yale.edu | (203) 785-6330 http://krauthammerlab.med.yale.e

Re: Good news from the EBI Semantic Web Industry Workshop and LODD members

Hi, The presentations will be available for companies in the EBI Industry program i.e. http://www.ebi.ac.uk/industry/ind-prog-index.html Otherwise I can send mine, and I assume Scott etc... can send theirs too the list as well. It was full room with +/- 45 registered people. The Pistoia Allian

RE: Good news from the EBI Semantic Web Industry Workshop and LODD members

It's organised by EBI. They have an industry programme, where companies pay a fee to be member and then have access to training, meetings etc. I/we are not members so I do not know the details. No, it's not related to the Pistoia Alliance Cheers, Claus -Original Message- From: public

Re: Good news from the EBI Semantic Web Industry Workshop and LODD members

Hi, Scott Thanks for the feedback regarding my tutorial. One point of note - I'm with Eli Lilly, not Johnson & Johnson. Thanks, J Phil Brooks Information Consultant, Data Integration Team Enterprise Capabilities Eli Lilly and Company j_phil_bro...@lilly.com (317) 277-3765 "M. Scott Marshall"

Re: Good news from the EBI Semantic Web Industry Workshop and LODD members

I didnt see these questions get answered so... - The workshop was organised by me (Lee Harland, Pfizer), Derek Scuffle (Syngenta), Dominc Clark & Nicolas Le Novere. - There were about 50 people there, mostly industry and some invited speakers & some EBI - For those who dont know it, the EBI indu

Re: Good news from the EBI Semantic Web Industry Workshop and LODD members

Hi Phil, Eli Lilly - yes, of course! Thanks for correcting my gaffe. I should have known better than to press send without fact checking. While I'm at it, I should mention that Phil set up exercises in TopBraid Composer. Dean Allemang, Chief Scientist at TopQuadrant, who gave a talk at the worksh

Re: Good news from the EBI Semantic Web Industry Workshop and LODD members

On Wed, May 25, 2011 at 12:56 AM, M. Scott Marshall wrote: > * Egon Willighagen is updating the downloadable RDF version of ChEMBL > to version 9 This download is available from: https://github.com/egonw/chembl.rdf (click the Download button) What I have not done yet is to update the online SP

Re: Good news from the EBI Semantic Web Industry Workshop and LODD members

are the presentations/program somewhere available? was there any representative of a biotech company attending such workshop? is it somehow related to the Pistoia Alliance? cheers, Erick On 25 May 2011 00:56, M. Scott Marshall wrote: > Last week, Michel Dumontier, Matthias Samwald and I were i