Hi Peter,
Indeed the owl:sameAs relationship is not bidirectional. There are fewer
SIDER drugs map to DrugBank drugs because (1) the more regularly updated
DrugBank doesn't have an equivalent drug in SIDER (last update was in 2009,
so this is an issue with currency), and (2) even if a sameAs relat
Hi Paul,
Given the difference in the bare numbers of drugs in each dataset, it
is likely that the owl:sameAs relations are not all bidirectional.
That may affect the semantics of both queries, as for one you are
starting off in Sider and using its available owl:sameAs relations to
get to DrugBank,
Hi all,
As a follow up, here's some stats: There are over 4700 DrugBank drugs, 893
SIDER drugs.
More importantly, the equivalence mapping between SIDER and DrugBank drug
entities are not accurate (or not current). In fact, the mapping doesn't
seem to be symmetric. For example, if I query with a pa
Apologies for cross-postings
--
FINAL CALL FOR PAPERS
--
The Sixth International Workshop on
Hi gang,
I was wondering whether there are plans to update the SIDER LODD and sync it
with the latest version of the SIDER database? It's over two years old. Is
there a published procedure for performing the RDFisation? I'm willing to
help out as well.
Cheers,
Paul
--
Paul Rigor
http://www.ics.uci
Hi -
As a follow on to presentations i made on the lipid ontology at
ICBO2009, BioRDF W3C-HCLS 2010 and CSHALS2011,
here is the BMC Bioinfromatics paper detailing how we use lipid
ontology for small molecule classification and deploy
this functionality using SADI Semantic web services.
http://www.
Hi Peter,
On Wed, Aug 3, 2011 at 1:02 PM, Peter Ansell wrote:
> On your question about Chembl in Bio2RDF, we currently directly use
> Egon's sparql endpoint to provide access to it, but we can easily
> switch, thanks to the way the server can be configured. If John
> Overington is publishing RDF,
Hi all,
Earlier today I received this enquiry from Joerg Kurt Wegner on the
Bio2RDF support tracker
https://sourceforge.net/tracker/?func=detail&atid=814190&aid=3385405&group_id=142631
"I have a maintenance and development timeline question.
Can you please list all integrated data sources with
