Re: An interesting article from The Atlantic

2012-04-07 Thread Tim Clark
+1 ATB, Tim On Apr 7, 2012, at 4:23 PM, Mark wrote: > http://www.theatlantic.com/technology/archive/2012/04/the-problem-with-wikidata/255564/ > > I'm unsure of the veracity of the problem he is describing, but I do agree > with the underlying premise - that there is not "one ontology to rul

An interesting article from The Atlantic

2012-04-07 Thread Mark
http://www.theatlantic.com/technology/archive/2012/04/the-problem-with-wikidata/255564/ I'm unsure of the veracity of the problem he is describing, but I do agree with the underlying premise - that there is not "one ontology to rule them all"... (unfortunately, my recent grant reviewers tho

Re: reasoning on gene ontology

2012-04-07 Thread Samuel Croset
Hi Bin, I have been playing around the GO and looking for interesting cases too. I believe the reasoner could help for the following tasks: 1- Terms retrieval/search, as you pointed out, SW queries are more powerful and intuitive than relational databases one. 2- Ontology re-factoring: When new

Re: reasoning on gene ontology

2012-04-07 Thread robert Stevens
wwe've put a little query tool on-line at http://owl.cs.manchester.ac.uk/goal/ that uses the ELK reasoner to form queries over mouse proteins annotated with GO, MPO and HDO. There's a paper coming out in a special issue of JBMS real soon - a version can be found at http://www.cs.man.ac.uk/~steve