Re: HPO and Gene Ontology Licenses

2012-08-08 Thread Alan Ruttenberg
On Wed, Aug 8, 2012 at 5:42 PM, Michel Dumontier wrote: >> >> >> > The objective here would be to provide an RDF and SPARQL friendly >> > version of OBO ontologies. It would reduce the ontological commitment to >> > RDF, so in this sense, it would be a semantic loss, but makes it easier to >> > re

Re: HPO and Gene Ontology Licenses

2012-08-08 Thread Alan Ruttenberg
On Wed, Aug 8, 2012 at 8:28 PM, Peter Ansell wrote: > On 9 August 2012 00:00, Alan Ruttenberg wrote: >> We have discussed that the OBO Foundry policy is to use CC0 or CC-BY >> and it has been put to the GO that we would like to migrate to that >> license. I don't know the status of that discussio

Re: HPO and Gene Ontology Licenses

2012-08-08 Thread Peter Ansell
On 9 August 2012 00:00, Alan Ruttenberg wrote: > We have discussed that the OBO Foundry policy is to use CC0 or CC-BY > and it has been put to the GO that we would like to migrate to that > license. I don't know the status of that discussion. Was there a discussion of the merits of CC-BY-SA as a

Re: HPO and Gene Ontology Licenses

2012-08-08 Thread Alison Callahan
Hi Peter, We have made a preliminary RDFization guide for Bio2RDF, available here: http://github.com/bio2rdf/bio2rdf-scripts/wiki/RDFization-Guide-v1.0 This guide will give you a general idea of how we generate Bio2RDF URIs when converting datasets to Bio2RDF linked data. If you have any questio

Re: HPO and Gene Ontology Licenses

2012-08-08 Thread Michel Dumontier
> > > > > The objective here would be to provide an RDF and SPARQL friendly > version of OBO ontologies. It would reduce the ontological commitment to > RDF, so in this sense, it would be a semantic loss, but makes it easier to > retrieve relations between entities. We could always provided links

Re: HPO and Gene Ontology Licenses

2012-08-08 Thread Alan Ruttenberg
On Wednesday, August 8, 2012, Michel Dumontier wrote: > Hi Alan, > > > On Wed, Aug 8, 2012 at 10:00 AM, Alan Ruttenberg wrote: >> >> We have discussed that the OBO Foundry policy is to use CC0 or CC-BY >> and it has been put to the GO that we would like to migrate to that >> license. I don't know

Re: HPO and Gene Ontology Licenses

2012-08-08 Thread Michel Dumontier
Hi Alan, On Wed, Aug 8, 2012 at 10:00 AM, Alan Ruttenberg wrote: > We have discussed that the OBO Foundry policy is to use CC0 or CC-BY > and it has been put to the GO that we would like to migrate to that > license. I don't know the status of that discussion. > > We certainly welcome the adopti

Re: Telecon CANCELED: Clinical Decision Support for Personalized Medicine

2012-08-08 Thread Luciano, Joanne S.
Would someone with access update the HCLS google calendar to reflect the cancellation. And let us know who has access. Thanks, Joanne On Aug 8, 2012, at 11:07 AM, Matthias Samwald wrote: The CDS teleconference tomorrow is cancelled. (once again, let's reduce the number of teleconferences while

Telecon CANCELED: Clinical Decision Support for Personalized Medicine

2012-08-08 Thread Matthias Samwald
The CDS teleconference tomorrow is cancelled. (once again, let's reduce the number of teleconferences while several people are on vacation over the summer months, and use e-mail instead) Cheers, Matthias

Re: HPO and Gene Ontology Licenses

2012-08-08 Thread Alan Ruttenberg
We have discussed that the OBO Foundry policy is to use CC0 or CC-BY and it has been put to the GO that we would like to migrate to that license. I don't know the status of that discussion. That said, I would be strongly discouraging of (but unable to prevent) any "no-blank-node" rendering of GO o

Reminder: Semantic Systems Biology Today @ 11AM EDT

2012-08-08 Thread Helena Deus
Please join me for today's semantic systems biology telco. We will continue discussion on merging various rdfized SBML / Biopax models and removing the inconsistencies. We have now loaded the entire Reactome/Human database and have begun assembling the SPARQL queries to reveal the complex, and its