# I am sending the previous email again as I met some messages;
Hi,
I am working on human gene expression database, H-ANGEL.
e.g.)
http://www.h-invitational.jp/hinv/h-angel/wge_server.cgi?gpid=HIX0005064
where we have rather classical gene expression data, such as micorarray, DNA
chips, ESTs, BodyM
Hi,
I am working on human gene expression database, H-ANGEL.
e.g.)
http://www.h-invitational.jp/hinv/h-angel/wge_server.cgi?gpid=HIX0005064
where we have rather classical gene expression data, such as micorarray, DNA
chips, ESTs, BodyMaps, etc.
We are planning to make this data into RDFs, and in
hi all,
'“genome profiling” can also include the work of SNP identification etc.'
i think looking at SNP identification is not a bad idea but even tho the
same technology is used, in the end, the analysis is very different for
both microarray and NGS snp identification than gene expression.
thumbs up for "genome profiling" :)
Helena F. Deus, PhD
Unit Leader, Bioinformatics and Computational Biology
Digital Enterprise Research Institute
helena.d...@deri.org
+353 91 495 270
On Sep 10, 2012, at 5:48 PM, Michel Dumontier wrote:
> Lin et al, expanding the scope to genomic profiling is a
Lin et al, expanding the scope to genomic profiling is an excellent and
most welcome idea :)
Scott - ok, then let's plan asia-europe and europe-americas calls.
m.
On Tue, Sep 11, 2012 at 1:37 AM, Lin MD, Simon <
linmd.si...@mcrf.mfldclin.edu> wrote:
> In light of NGS, shall we call it “genome
In light of NGS, shall we call it "genome profiling" to expand the work from
'gene expression'? "genome profiling" can also include the work of SNP
identification etc. -Simon
From: Ra [mailto:ilpuccio.f...@gmail.com]
Sent: Monday, September 10, 2012 11:35 AM
To: Helena Deus
Cc: Michel Dumontier;
Hi Michel,
If someone could invent a timezone compressor, it would be very handy.
As you know, Asia-California-Europe calls are impossible without
causing pain to participants from one timezone.
As you may recall, I organized several followup telcos for followup
work on Biohackathon2011. Despite
All,
we discussed, at some point, that NGS data should be supported by the note.
should we call it transcriptomic representation note instead? both the term
"gene expression" and the note itself are still associated with microarrays, a
completelly different strategy from NGS. but both are rel
Hi Michael,
Yes, Michel is referring to the approach discussed in the "Translating
standards into practice" paper:
http://www.ncbi.nlm.nih.gov/pubmed/22449719
I grabbed one of his messages from an expressionrdf thread in July. In
fact, the next message in that thread was from you. :)
What I was
The W3C gene expression note is also of interest to me. I would be happy to
contribute a use case of Gene Screening from Next Generation Sequencing. What
is the time line of this project? I might not be able to work on it much till
the end of Sept. With regard to meetings, I am open and flexible
hi all,
> Note, I brought up wanting to integrate some definitions that Michel
> had brought up.
i might be off base here but :
> 3. semantic interoperability - establish SPARQL-based transformations
> of each source to a global schema
sounds like what the BioRDF paper laid the groundwork for?
hi all,
apologies, i am at a workshop today and tomorrow.
enjoy the talk,
michael
Michael Miller
Software Engineer
Institute for Systems Biology
> -Original Message-
> From: M. Scott Marshall [mailto:mscottmarsh...@gmail.com]
> Sent: Monday, September 10, 2012 7:16 AM
> To: HCLS
> Subje
In discussions about finishing touches on the Emerging Practices IG
Note, I brought up wanting to integrate some definitions that Michel
had brought up. I have finally located the text that I keep referring
to. :) See below.
Cheers, Scott
-- Forwarded message --
From: Michel Dumon
Hi, sorry but can't attend due to paper deadline,
If any work is needed from me for the note let me know,
Cheers
2012/9/10 M. Scott Marshall :
> Trying Google Hangout for audio, this time *without* Zakim, to avoid
> feedback loops. Amrapali will send a link out in e-mail and on the IRC
> channel
Dear all,
Here's a link to the hangout:
https://plus.google.com/hangouts/_/1c18f072955fb6b41783b82aeee67f21176b680d?authuser=2&hl=en
Here's the link to the presentation: http://goo.gl/prSs9.
Thanks.
Regards,
Amrapali Zaveri Gokhale
http://aksw.org/AmrapaliZaveri
On Mon, Sep 10, 2012 at 4:15 P
Trying Google Hangout for audio, this time *without* Zakim, to avoid
feedback loops. Amrapali will send a link out in e-mail and on the IRC
channel to the hangout, which we will use for screen sharing and
audio. If you have problems, send mail to mscottmarsh...@gmail.com.
We didn't have enough par
[Apologies for cross-posting]
CALL FOR PAPERS
Special Issue on Biomedical Information through the Implementation of
Social Media Environments
Dear Colleagues,
We would like to encourage you to submit papers to Special Issue on
Biomedical Information through the Implementation of Social Media
En
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