Thanks for the nice overview, Peter.
On Jan 21, 2013, at 7:14 PM, peter.hend...@kp.org wrote:
> I've looked at the web pages and even installed some of the many suggestions
> (thanks).
> Most were more than I need.
>
> Tried to install csf2rdf4lod. It keeps adding dependancies and seems much
For one or two spreadsheets, I've found Google/Open Refine with its RDF
extension to be very quick and easy to learn and get up and running.
Jim
On Mon, Jan 21, 2013 at 7:14 PM, wrote:
> I've looked at the web pages and even installed some of the many
> suggestions (thanks).
> Most were more t
Hi Peter,
Michel Dumontier's php-lib library is what Bio2RDF has been using for
converting TSV, CSV files (and other file formats) to RDF [1]. It contains
some aspects that are Bio2RDF specific, namely its support for prefixed
URIs, but any Pull Requests on GitHub would be appreciated to generalis
I've looked at the web pages and even installed some of the many
suggestions (thanks).
Most were more than I need.
Tried to install csf2rdf4lod. It keeps adding dependancies and seems much
more involved (and scalable) than what I'm looking for.
I only want to experiment with some single sprea
Congrats Michel!!
--
Paul Rigor
http://www.ics.uci.edu/~prigor
On Mon, Jan 21, 2013 at 2:34 PM, Amit Sheth wrote:
>
> Congrats Michael--
> echoing all other emails on the positives and win--
>
> cheers,
> Amit
>
> *Amit Sheth * G+
> Twitter
Congrats Michael--
echoing all other emails on the positives and win--
cheers,
Amit
Amit Sheth G+ Twitter Blog LinkedIn Home Page
@ Kno.e.sis - Ohio Center of Excellence in Knowledge-enabled Computing (like
Kno.e.sis on FB)
LexisNexis Ohio Eminent Scholar, Wright State University
On Jan 21, 2
Very welcome. Just be sure to install
the RDF extension to Google Refine:
http://refine.deri.ie/
This will give you the capability to reconcile and interlink your
spreadsheet data against external SPARQL endpoints or RDF dumps,
to search the
Michel
Good for you - congratulations.
On 21/01/2013 19:15, Michel Dumontier wrote:
Dear friends, colleagues and collaborators,
I'm thrilled to announce that I've accepted an offer to join
Stanford University as an Associate Professor in Biomedical
Informatics - effective September 2013!
This is a great news. A big win for everyone.
Congratulations Michel!
Rafael Richards
On Jan 21, 2013, at 2:18 PM, "Michel Dumontier"
mailto:michel.dumont...@gmail.com>> wrote:
Dear friends, colleagues and collaborators,
I'm thrilled to announce that I've accepted an offer to join Stanfo
Congrats Michel - great news!
--Sivaram
___
Sivaram Arabandi, MD, MS
ONTOPRO
www.ontopro.com
T 832.726.2322
E s.araba...@ontopro.com
Think Semantics. Tame Silos.
On Jan 21, 2013, at 1:15 PM, Michel Dumontier wrote:
> Dear friends, colleagues and collaborator
Stanford are doing themselves a big favor with this move ...
Félicitations et meilleurs voeux - all the best!
Tim
On Jan 21, 2013, at 2:15 PM, Michel Dumontier wrote:
> Dear friends, colleagues and collaborators,
>
>I'm thrilled to announce that I've accepted an offer to join Stanford
Congrats Michel! Look forward to potential collaborations on the
imaging/semantics front...
Daniel
___
Daniel L. Rubin, MD, MS
Assistant Professor of Radiology and Medicine (Biomedical Informatics)
Department of Radiology | St
Congratulations Michel! Great decision by Stanford and you will be an excellent
addition to the BMI faculty. Enjoy the sunny and warm California :-)
Best wishes,
- Jyoti
From: Michel Dumontier
mailto:michel.dumont...@gmail.com>>
Date: Monday, January 21, 2013 1:15 PM
To: HCLS mailto:public-semw
Such a bundling of forces is a very exciting development indeed. Great news
for everyone!
-Scott
On Mon, Jan 21, 2013 at 8:55 PM, Mark Musen wrote:
> We are obviously thrilled that Michel will be joining our faculty at
> Stanford, and we are looking forward to many new opportunities for
> coll
Congratulations Michel! A big win for Stanford!
Jim
On Mon, Jan 21, 2013 at 2:40 PM, Erich Gombocz
wrote:
> Dear Michel,
>
> ** **
>
> Congratulations to your new position at Stanford! Having leading and
> outside-of-the box thinking minds in collaborative clinical and
> translational resea
We are obviously thrilled that Michel will be joining our faculty at Stanford,
and we are looking forward to many new opportunities for collaboration with the
HCLS community.
Mark
On Jan 21, 2013, at 11:15 AM, Michel Dumontier wrote:
> Dear friends, colleagues and collaborators,
>
>I'm t
Congratulations Michel - this is great news! Stanford BMI made a great
choice that I expect will catalyze several high impact innovations in
the coming years!
-Rich
On 01/21/2013 02:15 PM, Michel Dumontier wrote:
Dear friends, colleagues and collaborators,
I'm thrilled to announce that I'
Dear Michel,
Congratulations to your new position at Stanford! Having leading and
outside-of-the box thinking minds in collaborative clinical and
translational research together will be a great win for the entire
scientific community and the W3C alike.
All the best!
Erich
From: Mich
Congratulations Michel!!!
charlie
From: Lin MD, Simon [linmd.si...@mcrf.mfldclin.edu]
Sent: Monday, January 21, 2013 2:21 PM
To: HCLS
Subject: RE: Stanford-bound!
Congratulations, Michel!! Great place for clinical and translational research!
Simon
==
Congratulations, Michel!! Great place for clinical and translational research!
Simon
==
Simon Lin, MD | Director, Biomedical Informatics Research Center | Marshfield
Clinic Research Foundation | 1000 N Oak Ave, Marshfield, WI 54449 |
715-221-7299
Dear Rafael and All,
IO Informatics' Knowledge Explorer. Professional Edition, also provides
an automated way to facilitate import and updating a triplestore backend
of your choice via monitored folders which will map and import incoming
spreadsheets to RDF. You can set up multiple monitored fo
Tim Lebo's csv2rdf4lod is designed for repeatability and scalability. It
was developed to handle transforming the data from data.gov into RDF, and
has been set up to automatically convert thousands of datasets. We even
have one project that regularly updates conversion configurations from
github an
Hi Rafael and everyone,
As you say, Anzo (in particular Anzo for Excel) is designed for
enterprises to curate large numbers of spreadsheets, map them to
ontologies & to existing RDF instance data, and maintain them as changes
are made to the spreadsheets or to the data in the spreadsheets. It
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Hi Peter,
Our tool, RightField (http://www.rightfield.org.uk), allows you to embed
ontology term selection into spreadsheets, and to extract these
selections as RDF. It is designed more for assisting in the data
collection process (i.e. when users fill in a spreadsheet that has been
marked-up
Hello,
On Sun, Jan 20, 2013 at 7:38 PM, Rafael Richards wrote:
> Any other suggestions for any other 'pipeline' tools to keep CSV and RDF in
> sync which are (1) currently maintained and (2) have sufficient
> documentation and examples of importing and converting CSV to RDF?
If you need t
Hi,
RDF/Triplestores and Neo4J can both be used as technologies to represent graph
structures (like p-p interactions). Neo4J may offer a slightly more natural
representation of edge attributes for some, but otherwise they both can "hold
graphs".
Than they are different tools.
If you go for quer
I am also interested in integrating healthcare data published by the CDC.
Unfortunately, it comes as nearly 200 separate spreadsheets:
http://www.cdc.gov/nchs/hus/contents2011.htm#chartbookfigures
The only thing I am aware of that is designed to keep large numbers
(potentially hundreds) of spr
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