Bio-Ontologies SIG 2013 -- 10 days to submission deadline

2013-04-02 Thread Nigam Shah
Dear Colleagues, 10 days to submission deadline! *What:Call for participation in the Bio-Ontologies SIG 2013 ( www.bio-ontologies.org.uk)* *Where: July 20, 2013, Berlin, Germany. (Co-located with ISMB/ECCB 2013) When: Submissions Due: April 12th, 2013 (Fri) @ www.bio-ontologies.org.uk/submi

Re: VCF and RDF, at Clinical Pharmacogenomics TF, Wed Apr 3rd

2013-04-02 Thread Jeremy J Carroll
Hi Michael I am curious … about "use a base class to handle most of the parsing then have a derived class per provider and try to drive everything through a configuration file" I have not yet seen enough variety of VCF files, but so far I am assuming that the data lines can largely be addressed

Re: owl:sameAs - Harmful to provenance?

2013-04-02 Thread Alan Ruttenberg
On Tuesday, April 2, 2013, David Booth wrote: > On 03/27/2013 10:56 PM, Pat Hayes wrote: > >> On Mar 27, 2013, at 7:32 PM, Jim McCusker wrote: >> >>> If only owl:sameAs were used correctly... >>> >> >> Well, I agree that is a problem, but don't draw the conclusion that >> there is something wrong

Re: owl:sameAs - Harmful to provenance?

2013-04-02 Thread David Booth
On 03/27/2013 10:56 PM, Pat Hayes wrote: On Mar 27, 2013, at 7:32 PM, Jim McCusker wrote: If only owl:sameAs were used correctly... Well, I agree that is a problem, but don't draw the conclusion that there is something wrong with sameAs, just because people keep using it wrong. Agreed. And

Recording authorship, curation and digital creation with the PAV ontology

2013-04-02 Thread Stian Soiland-Reyes
We *) are pleased to announce the release of the PAV (Provenance, Authoring and Versioning) ontology v2.1. http://purl.org/pav/2.1 PAV 2.1 includes subproperty mapping to the W3C provenance ontology PROV-O [2], thus enabling interoperability between PAV and PROV-compliant tools. PAV supplies

Re: Updated Invitation: HCLS - all @ Tue 2013-04-02 10:00 - 11:00 (public-semweb-lifesci@w3.org)

2013-04-02 Thread Michel Dumontier
Hi, Maori's slides are available here: http://www.w3.org/wiki/images/6/6f/2013-hcls-maori-ito-db-schema-dot-org.pdf Given the proposal: http://www.w3.org/wiki/WebSchemas/BioDatabases#BiologicalDatabaseEntry major suggestions included 1. allow/enforce the reference to be a URL, such as the pubme