Re: Ontology for Somatic Mutations?

2013-07-26 Thread Phillip Lord
In what sense? See if we can generate the description of the karyotype from a genome sequence? Or at least compare the two? I agree that this would be interesting. At the moment, the problem that we have is the ISCN string is computationally relatively intractable. In most cases, though, the ISCN

Re: GO_REF URI prefix?

2013-07-26 Thread N Juty
We actually had this in our curation pipeline, but since it's clearly needed, I've just released it: data set - http://identifiers.org/go.ref/ example - http://identifiers.org/go.ref/GO_REF:045 Chris, if you have any suggestions to improve the entry could you let me know please, particularl

Re: GO_REF URI prefix?

2013-07-26 Thread Michel Dumontier
Hi Jim, I added the entry to our life science registry [1]. Bio2RDF will use http://bio2rdf.org/go.ref:## m. [1] http://tinyurl.com/dataregistry On Thu, Jul 25, 2013 at 11:41 PM, Jim McCusker wrote: > Does anyone know what the URI prefix is for GO_REF? And no, > http://www.geneontology.

Re: Standards for inclusion/exclusion criteria ?

2013-07-26 Thread Kathrin Dentler
Hi Andrea, I'm also sorry for the late reply. My colleagues have been working on a library of eligibility criteria to support the design of clinical trials [1]. The criteria are now online in a triple store and visualised / searchable [2]. Also, an article [3] has been published lately that