thanks Richard and Michel
Very helpful, I'm sure I will have more questions soon.
Marc
On Fri, Sep 20, 2013 at 8:08 PM, Richard Boyce wrote:
> Hi Marc,
>
> Attached is a script that will get all DDIs from NDF-RT using a query to
> the Bioportal SPARQL endpoint. The data is output to as a dict
Hi Marc,
Attached is a script that will get all DDIs from NDF-RT using a query to
the Bioportal SPARQL endpoint. The data is output to as a dictionary to
a Python pickle. wrt mapping, one thing I know about NDF-RT is it uses
salt forms as the primary label for many of its drugs so mapping
re
a thanks Mark !!!
m.
On Fri, Sep 20, 2013 at 12:22 PM, Mark wrote:
> Michel, I love how comprehensive your responses are! I always learn from
> them and I really should take a lesson from you in this regard vv my own
> projects! :-)
>
> M
>
>
>
> Michel Dumontier wrote:
>>
>> Hi Marc,
>>
Also, Rich Boyce has done some work [1] to map SPL to Bio2RDF and other
resources, and Chris Chute showed how to map to ndf-rt and rxnorm [2]
[1] http://www.ncbi.nlm.nih.gov/pubmed/23351881
[2] http://www.ncbi.nlm.nih.gov/pubmed/23256517
m.
On Fri, Sep 20, 2013 at 10:17 AM, Michel Dumontier <
m
Michel, I love how comprehensive your responses are! I always learn from them
and I really should take a lesson from you in this regard vv my own projects!
:-)
M
Michel Dumontier wrote:
>Hi Marc,
>DrugBank offers mappings to DPD. you can access drugbank data in RDF
>with
>Bio2RDF.
>
>bio2r
Hi Marc,
DrugBank offers mappings to DPD. you can access drugbank data in RDF with
Bio2RDF.
bio2rdf.org/datasets/drugbank - summary page
http://drugbank.bio2rdf.org/fct - faceted browser
http://drugbank.bio2rdf.org/sparql - sparql endpoint
http://download.bio2rdf.org/current/drugbank/ - rdf fil
Dear All,
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Hi
Is anyone aware of any open work done on querying data out of NDF-RT, or
some informative literature on anyone mapping Canadian drugs to it?
I've been asked to match as many Canadian drugs from the Health Canada Drug
Product Database (DPD) to equivalent formulations in the NDF-RT
Once I have
Dear all,
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Knowledge Engineering / Knowledge Informatics has an open position for a
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