Re: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Erich Gombocz
+10 on Peter's comments! Agree completely with his rationals Erich Gombocz "Life is always live - no rehearsal, no cuts, no replay" Sent from my HTC - Reply message - From: "peter.hend...@kp.org" Date: Sat, Dec 20, 2014 17:23 Subject: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup

Re: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Matthias Samwald
Dear all, I have hardly participated in any of the calls lately and am coming at this as a bit of an outsider. From my reading it indeed seems that any officially accepted RDF version of FHIR data would use a code + code system representation of 'concepts' from controlled vocabularies / ontol

RE: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Peter . Hendler
I can think of two reasons why (except maybe in an academic paper or PHD thesis) we would not put SNOMED and the information model in one RDF/OWL Ontology. One is the idea of keeping the information model, specifically FIHR, very small. The goal is to keep it under 200 resources, closer to 100

Re: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread David Booth
Hi Vipul, On 12/20/2014 06:35 PM, Vipul Kashyap wrote: Thanks for the feedback and clarification – Looks like we will have to work at two different layers: 1.The syntactic translation from FHIR XML/JSON to RDF/OWL – 2.Enrichment of the RDF/OWL representation via ontologies and OWL axioms.. wh

RE: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Vipul Kashyap
Thanks for the feedback and clarification – Looks like we will have to work at two different layers: 1. The syntactic translation from FHIR XML/JSON to RDF/OWL – 2. Enrichment of the RDF/OWL representation via ontologies and OWL axioms.. which is where I believe would provide t

Re: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Lloyd McKenzie
Well, for FHIR at a minimum, you must be able to round-trip instances. And what will appear in the JSON and XML instances is the code + code system (and often multiple code-code system pairs). Often, the code + code system won't even link to an ontology that's known by the receiver. And if we w

RE: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Vipul Kashyap
Not clear about the reason for this design decision – Has it been discussed and agreed upon by the members of this group? Or is it the case that if we adopt a different approach – it will not be accorded official status by the FHIR folks? BTW – It might turn out that code system + code appro

RE: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Vipul Kashyap
Thanks for the clarification below – The word “Condition” is an overloaded one – and as described below is an N-ary relationship between a “Clinical Condition”, Patient, Physican, etc. ---Vipul From: Lloyd McKenzie [mailto:ll...@lmckenzie.com] Sent: Saturday, December 13, 2014 6:56 PM To

RE: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Vipul Kashyap
I think using a concrete example helps. One thing which is becoming clear it that we are perhaps modeling Snomed in different ways. ok, well, how it works is that FHIR has a resource called "condition", which is a record keeping construct people use to exchange information about proble

Re: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Lloyd McKenzie
>From a FHIR (or v2 or v3) perspective, the linkage will *have* to be by code + code system. That's what appears in the instance and the RDF representations will need to be driven purely based on what appears in the instances. The code + code system can be used to infer the concept represented by

RE: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Vipul Kashyap
VK> Partially agree with you. Another reason for taking up RDF/OWL representation is to make these descriptions (business, clinical) user friendly. I have added this requirement to the wiki page. Then we have a different notion of "user friendly" :> The RDF syntax will almost certainly be l

RE: Minutes of last week's (Dec 2) HL7 ITS RDF Subgroup / W3C HCLS COI call -- Review of FHIR ontology approaches (cont.)

2014-12-20 Thread Vipul Kashyap
Hi Peter, Thanks for your email below – If I may summarize: Clinical Models capture the “who, when, where, why” Snomed/Medical Terminogies – capture the “what” Agree with your suggestion that Snomed should not be used for the former – The underlying motivation for my suggestion – as