Re: LODD paper from 2011 now 'read' 10.001 times

Wow, that's great, thanks Egon! David _ Dr. David J. Wild, Assistant Professor Indiana University School of Informatics & Computing http://about.me/djwild http://djwild.info 901 E 10th St Rm 207, Bloomington, IN 47408 Tel. +1 812 856 1848 Email djw...@i

Re: Computers may predict drugs’ side effects

omington, IN 47408 Tel. +1 812 856 1848 On Tue, Jun 12, 2012 at 12:51 PM, Oliver Ruebenacker wrote: > Hello, > > On Tue, Jun 12, 2012 at 12:32 PM, David Wild wrote: > >> Hopefully, in the future, we will be able to simulate, for a given > >> chemical structure: &g

Re: Computers may predict drugs’ side effects

> > Hopefully, in the future, we will be able to simulate, for a given > chemical structure: > > - which proteins (or other bio-molecules) it interacts with > - how that interaction changes the function of the bio-molecule > - how changed function of molecules change biological networks and > sy

Re: semantic technologies in Pharma

Nitin - there was a thread on this a while back so you might check out the archives. Our contribution is: Wild, D.J., Ding, Y., Sheth, A.P., Harland, L., Gifford, E.M., Lajiness, M.S. Systems Chemical Biology and the Semantic Web: what they mean for the future of drug discovery research

Re: Systems Biology Task Force Kick-Off - tomorrow (Feb 22) at 11AM EDT

Me too - I was sorry not to be able to make the initial meeting, and I am very interested in participating. My group is researching large scale data mining of drug discovery datasets, including development of the Chem2Bio2RDF repository and various algorithms (more information at http://djwild.info

Re: Evidence of Significance of Semantic Web for Life Sciences

Thanks to Amit and Amrapali for circulating the article The impression I get is that at least the pharma industry is at a positive tipping point with SW. Previously, there was a lot of skepticism that SW could actually be useful. However, it's now quite straightforward, using tools like TopBraid,

Re: provenance questionnaire, v2

> > Cheers, > Lena > > > On Tue, Sep 6, 2011 at 6:18 PM, David Wild wrote: > >> So for me one very interesting aspect of this is being able to deal with a >> variety of data licensing. For Chem2Bio2RDF we generally restricted >> ourselves to very open se

Re: provenance questionnaire, v2

So for me one very interesting aspect of this is being able to deal with a variety of data licensing. For Chem2Bio2RDF we generally restricted ourselves to very open sets, but there are many useful datasets which are subscription only, or, for example, free to academia but subscription for industry