Re: How do you go about versioning ?

2014-09-22 Thread Stian Soiland-Reyes
ersion and its actual current version to claim to be the current version. :). By adding the has*Version relations we found a way to also be specific about that "officialness". -- Stian Soiland-Reyes, myGrid team School of Computer Science The University of Manchester http://soiland-reyes.com/stian/work/ http://orcid.org/-0001-9842-9718

Re: How do you go about versioning ?

2014-09-22 Thread Stian Soiland-Reyes
anding conceptual thing (like a "version number") rather than an equivalent snapshot of the resource. -- Stian Soiland-Reyes, myGrid team School of Computer Science The University of Manchester http://soiland-reyes.com/stian/work/ http://orcid.org/-0001-9842-9718

Re: How do you go about versioning ?

2014-09-22 Thread Stian Soiland-Reyes
d should/could anyway be the same of the last version, no? > > best, > Andrea > > On Mon, Sep 22, 2014 at 1:04 PM, Stian Soiland-Reyes > wrote: >> >> We have in PAV 2.3 also added pav:hasCurrentVersion which is the easy >> way to link from an unve

Re: How do you go about versioning ?

2014-09-22 Thread Stian Soiland-Reyes
tements) >>>> that return what is known for http://example/P04637 at a given time. >>>> >>>> Note that http://example/P04637/V2 doesn't appear in results (except in >>>> predicates linking different versions, like "replaces") >>>> >>>> >>>> Basically I never have an assertion as: >>>> >>>> http://example/P04637 hasVersion 2, but version is only used to filter >>>> which pack of information is relevant. So if I mix results from different >>>> versions (e.g. quads) I can filter what is relevant and where to me. >>>> >>>> >>>> Is this a common way of doing things ? >>>> >>>> If not, have you thought about it and if you took alternatives, why ? >>>> >>>> >>>> best, >>>> >>>> Andrea >>> >>> >> > -- Stian Soiland-Reyes, myGrid team School of Computer Science The University of Manchester http://soiland-reyes.com/stian/work/ http://orcid.org/-0001-9842-9718

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-27 Thread Stian Soiland-Reyes
> and the file > gdac.broadinstitute.org_STAD.Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2014071500.0.0.tar.gz > <http://gdac.broadinstitute.org/runs/stddata__2014_07_15/data/STAD/20140715/gdac.broadinstitute.org_STAD.Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_g

Announcement: PAV (Provenance, Authoring and Versioning) ontology 2.3.0

2014-08-22 Thread Stian Soiland-Reyes
://purl.org/pav/ OWL import 2.3: http://purl.org/pav/2.3 Further documentation: http://purl.org/pav/2.3/html Cite as: Paolo Ciccarese, Stian Soiland-Reyes, Khalid Belhajjame, Alasdair JG Gray, Carole Goble, Tim Clark (2013): PAV ontology: provenance, authoring and versioning. Journal of biomedical

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-20 Thread Stian Soiland-Reyes
re are multiple sources. On 11 Aug 2014 15:53, "Gray, Alasdair J G" wrote: > Hi Stian, > > On 5 Aug 2014, at 13:37, Stian Soiland-Reyes < > soiland-re...@cs.manchester.ac.uk> wrote: > > Just some inputs: > > > PROV defines prov:wasDerivedFrom which in b

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-05 Thread Stian Soiland-Reyes
iew of dataset description level metadata profiles > and their relationships': reference not resolved, image doesn't show > > ยท Figure 2: 'Improve diagram. Multiple appearance of > concepts/description levels unclear.': reference not resolved, image doesn'

Recording authorship, curation and digital creation with the PAV ontology

2013-04-02 Thread Stian Soiland-Reyes
nwhile keeping precise distinctions between concepts such as authoring/creating and importing/retrieving. In our blog post [2] we also show how PAV can be use concurrently with other PROV extensions, and how PROV tools can be used for interoperability such as visualization. *) This announcement is se

Open Annotation Core Data Model public roll out invitation

2013-02-15 Thread Stian Soiland-Reyes
is no registration fee but RSVP (online) is required. RSVP for a rollout near you using one of the links above. For more information and individual agendas, see: <http://www.openannotation.org/RolloutInfo.html> -- On behalf of Open Annotation Community Group Stian Soiland-Reyes, myGrid tea

Re: [Ops-ttf] Fwd: DrugBank not available?

2012-12-18 Thread Stian Soiland-Reyes
sed this side of Christmas, we just need to do a few tweaks with imports. For a preview, see: http://www.essepuntato.it/lode/http://pav-ontology.googlecode.com/svn/branches/2.1/pav.owl Namespaces and imports should be the same <http://purl.org/pav/>, unless you explicitly imported the previ