ocol is run, the
> Factor Value for each of the Factors at that point are then associated with
> the Assay. this is actually the most important fact to know to do an
> analysis, like differentially expressed genes.
>
> cheers,
> michael
>
> From: Sudeshna Das [mailto:s.
s in
> previous versions of the model. In this model I omitted the subclasses for
> improved readability but I should not have omitted the relationship with
> assays. I am adding them back at your suggestion.
> Protocols we decided to leave formally unconnected to the data output
Hi Lena,
To capture the results of RNA-Seq here is what we captured for our site:
1. Accession - this could be the miRNA accession or Transcript accession or any
other identifier for novel transcripts.
2. The genomic interval (start, end and genome version).
3. Fragments per KB per million mappe
Hi Scott,
Thank you forwarding this thread. We have developed a repository for
stem cell microarray data,
and are currently in the process of exporting RDF data. We are
planning to export only the metadata
of the experiment - not the expression data or fold change. Although
that data also e
Notes for the call are available at
http://esw.w3.org/HCLSIG/SWANSIOC/Meetings/2010-5-3_Conference_Call
Best,
Sudeshna
On May 2, 2010, at 7:24 AM, Tim Clark wrote:
Reminder: Scientific Discourse Concall May 3, 10am EDT
This call will be led by Sudeshna Das and will focus on the
id Newman
On Mon, 2010-03-22 at 10:13 -0400, Sudeshna Das wrote:
http://esw.w3.org/Image:SWAN-myExp-MGED_Sketch_v3-1%2B2.pdf
On Mar 22, 2010, at 10:08 AM, Jun Zhao wrote:
Sorry guys, try 42572.
Jun
David R Newman wrote:
Hi All,
The call is starting 2pm UK time? I just tried to connect wi
the kickoff meeting for our new HCLS Scientific
Discourse task, "Discourse + Data + Experiment ", chaired by
Sudeshna
Das (sudeshna_das at harvard.edu), a a joint task with HCLS BioRDF's
MicroArray Use Case (Kei Cheung).
The objective of this task is to provide a general seman
