Thanks Kerstin,
I am familiar with the CDISC RDF as we aim to reuse it in eTRIKS (where
CDISC and we are a part of) and see how to best linked it to the
LinkedISA work. This will also very much useful for the CEDAR centre.
More off list to avoid spanning all.
Thanks,
Susanna
On 21/09/2014 13
informed decisions on coverage, use and
popularity of these reporting standards. Want you may need could be
complementary to what we do/aim to do, but happy to discuss options for
collaborations.
Thanks,
Susanna
On 21/09/2014 12:49, Kerstin Forsberg wrote:
Hi Andrea,
in an earlier attempt to
-data
Please, circulated it to interested parties.
Thanks,
Susanna
--
--
Susanna-Assunta Sansone, PhD
skype: susanna-a.sansone
http://uk.linkedin.com/in/sasansone
University of Oxford e-Research Centre
Associate Director and PI
www.isacommons.org|www.biosharing.org
Nature Publishing Group
Hi folks,
although primarily a biocuration position, we have clear plans to use
semantic web technologies!
More below; and note that this is a*open-ended position.*
Please, circulated it to interested parties.
Susanna
Nature Publishing Group is looking for an Editorial
icial CC pages on CC-ND and several sites echoing the same
text and theory, does any of you/working groups have direct experience
on this matter? Also pointers to articles and white papers is very much
appreciated.
Many thanks in advance,
Susanna
--
Susanna-Assunta Sansone, PhD
uk.linkedin.c
The American Medical Informatics Association (AMIA) is pleased to invite
submissions for the 2013 Joint Summits on Translational Bioinformatics
(TBI) and Clinical Research Informatics (CRI) to be held March 18-22,
2013 at the Parc 55 Hotel San Francisco, CA. The 2013 Joint Summits will
showca
erhaps
STRENDA wrt enzyme activity if any) for any functional evaluation of
variants. But beyond that, to fill in gaps, come join MIBBI!
Susanna
* note that this has now evolved in the BioSharing catalogue of
standards, if of interest (work in progress at biosharing.org)
On 25/05/2011 16:2
s on the
Semantic Web.
The organisers:
Nigam Shah, Stanford University
Larisa Soldatova, University of Wales, Aberystwyth
Susanna-Assunta Sansone, University of Oxford
Susie Stephens, Johnson & Johnson
--
ccessful paper
submissions will automatically be considered for poster presentation;
there is no need to submit both on the same topic.
Regards,
Susanna-Assunta Sansone
(on behalf of the organizers)
--
ere is no need to submit both on the same topic.
Kind regards,
the organisers
Nigam Shah, Stanford University
Larisa Soldatova, University of Wales, Aberystwyth
Susanna-Assunta Sansone, EBI
Susie Stephens, Johnson & Johnson
--
Susanna-Assunta Sansone, PhD
,
validator and converter (standalone) components.
We will come back to you on this soon - maybe starting a new thread to
link the two subgroups's specific activities.
Thanks,
Susanna
--
On 09/11/2010 13:42, Jim McCusker wrote:
A direct conversion of csv to rdf usually results in a entit
t into MAGE-Tab, but also Pride-XML and SRA-XML (SOFT is
ongoing) and we have just start working with HCLS-SD subgroup (Sudeshna
Das) to export in RDF.
Info and papers at: www.isa-tools.org; let me know if you intersted, can
provide you with more info.
Hi Tim and all,
note that OBI replaces MO (terms from the latter are being
decomposed/defined -where relevant-and enclosed in the fomer).
You'd better use OBI directly to avoid confusion.
Susanna
Tim Clark wrote:
I stand corrected and will use that terminology in future. Thanks
Mi
3:30-16:00 Research Talks (with coffee break)
16:00-17:30 Panel Session
17:30-close and Poster Session
This year's keynote speakers will by Andrew Rzhetsky (July 10th) and Tim
Clark (July 9th)
*** Organisers
Nigam Shah, Stanford University
Larisa Soldatova, University of Wales, Aber
Alm, Massachusetts Institute of Technology
Co-chairs:
* Edward DeLong, Massachusetts Institute of Technology
* Owen White, University of Maryland
* Dawn Field, NERC Centre for Ecology and Hydrology, UK
* Susanna-Assunta Sansone, European Bioinformatics Institute
Important dates:
* April 30, 2010
> integration of existing ontologies with some gap filling.
> Initial integration targets will be SWAN, myExperiment, MGED and
ResearchObjects.
Has this group considered OBI (http://obi-ontology.org/page/Main_Page)?
It includes and will replace MGED ontology.
Thanks,
Susanna
Jun Zhao
3:30-16:00 Research Talks (with coffee break)
16:00-17:30 Panel Session
17:30-close and Poster Session
This year's keynote speakers will by Andrew Rzhetsky (July 10th) and Tim
Clark (July 9th)
*** Organisers
Nigam Shah, Stanford University
Larisa Soldatova, University of Wales, Aber
lates
Submission templates are available from the website
(http://sites.google.com/site/bioontologies/submissions).
*** Organisers
Nigam Shah, Stanford University
Larisa Soldatova, University of Wales, Aberystwyth
Susanna-Assunta Sansone, EBI
Susie Stephens, Johnson & Johnson
-
Hi Kei,
correct, and just to clarify this
> ...if people are doing micorarray experiments only, MAGE-TAB and
ISA-TAB are essentially the same.
meaning that both can be used as fullfil the same reporting needs, but
their syntax is different.
Regards,
Susanna
Kei Cheung wrote:
Hi Susa
Hi Kei,
> isa-tab (how does this differ from mage-tab?)
ISA-Tab is a superset of MAGE-Tab and serves to report multi-omics (and
in general, multi-assays) studies. Please, see: http://isatab.sf.net and
details in the ISA-Tab specification.
Regards,
Susanna
--
Susanna-Assunta Sansone,
Program Chairs:
Phillip Lord (1), Susanna-A. Sansone (2), Nigam Shah (3), Matt Cockerill (4)
1. School of Computing Science, University of Newcastle, UK
2. EMBL-EBI The European Bioinformatics Institute, Cambridge, UK
3. Center for Biomedical Informatics, Stanford University, USA
4
ul papers will automatically be considered for poster presentation;
there is no need to submit both on the same topic.
The best papers from Bio-Ontologies 2008: Knowledge in Biology will be
published in BMC Bioinformatics.
*** Organisers
Phillip Lord, Newcastle University
Susanna-Assunta Sansone,
blished in BMC Bioinformatics.
*** Organisers
Phillip Lord, Newcastle University
Susanna-Assunta Sansone, EBI
Nigam Shah, Stanford
Matt Cockerill, BioMedCentral
*** Programme Committee
The programme committee, organised alphabetically is:
Mike Bada, University of Colorado
Judith Blake,
e day for at least one poster session.
Unsuccesful papers will automatically be considered for poster
presentation;
there is no need to submit both on the same topic.
*** Organisers ***
Phillip Lord, Newcastle University
Susanna-Assunta Sansone, EBI
Nigam Shah, Stanford
Matt Cockerill, BioMedCe
Hi, I am note sure about the background of this 'ontology for
experiments', but you may want to look at OBI effort too:
http://obi.sourceforge.net/
Susanna
Susie M Stephens wrote:
Lilly has done some preliminary work on defining an ontology for
experiments.
It would be great if
*^***^**
The programme is now available:
http://bio-ontologies.org.uk/download/Bio-Ontologies2007.pdf
REGISTRATION IS OPEN:
http://www.iscb.org/ismbeccb2007/registration/
See you in Vienna!
The Program Chairs:
Robert Stevens (1), Phillip Lord (2), Robin McEntire (3), Susanna-
Lord
Robert Stevens
Robin MacEntire
Susanna-Assunta Sansone
http://bio-ontologies.org.uk
--
s in its tenth consecutive
year. This year the workshop will have a celebratory and reflective
discussion on "Bio-Ontologies: ten years past and looking to the future".
PROGRAM CHAIRS:
Robert Stevens (1), Phillip Lord (2), Robin McEntire (3), Susanna-A.
Sansone (4)
1.School of Compute
op will have a celebratory and reflective
discussion on "Bio-Ontologies: ten years past and looking to the future".
PROGRAM CHAIRS
Robert Stevens (1), Phillip Lord (2), Robin McEntire (3), Susanna-A.
Sansone (4)
1.School of Computer Science, University of Manchester, UK
2.Sch
ert Stevens (1), Phillip Lord (2), Robin McEntire (3),
Susanna-Assunta Sansone (4)
1. School of Computer Science, University of Manchester, United Kingdom
2. School of Computing Science, University of Newcastle, United Kingdom
3. GlaxoSmithKline, USA
4. EMBL-EBI The
guidance of an advisory board, including
OBO and cBIO leaders. FuGO will also be an OBO Foundry Ontology: http://obofoundry.org/
Susanna
--
Susanna-Assunta Sansone, PhD
Project Coordinator, EBI
The European Bioinformatics Institute email: [EMAIL PROTECTED]
EMBL Outstation - Hinxton
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