Re: 'Variants' and Chromosome Modelling

2013-03-27 Thread Jeremy J Carroll
Hi Bob I am a message behind in my thinking, thanks for all your input. My use case is a lot less clear than it could be … in that the contribution I am seeking to make lies somewhere in the tool-chain, not at the very bottom, but also not right next to the scientists or clinicians working wit

RE: 'Variants' and Chromosome Modelling

2013-03-26 Thread Freimuth, Robert R., Ph.D.
Jeremy J Carroll [mailto:j...@syapse.com] Sent: Tuesday, March 26, 2013 3:30 PM To: Freimuth, Robert R., Ph.D. Cc: w3c semweb HCLS Subject: Re: 'Variants' and Chromosome Modelling Hi Bob In this message I reply to It will certainly be important to track metadata about the sequ

Re: 'Variants' and Chromosome Modelling

2013-03-26 Thread Jeremy J Carroll
s the impact of a genetic variant at a given location? This is a hot > field of study within genetic/bioinformatic research, and solutions to this > problem will be critical for clinical personalized medicine programs. > > Bob > > > From: public-semweb-lifesci-requ...@listhu

RE: 'Variants' and Chromosome Modelling

2013-03-26 Thread Freimuth, Robert R., Ph.D.
s problem will be critical for clinical personalized medicine programs. Bob From: public-semweb-lifesci-requ...@listhub.w3.org [mailto:public-semweb-lifesci-requ...@listhub.w3.org] On Behalf Of Jeremy J Carroll Sent: Thursday, March 21, 2013 5:01 PM To: w3c semw

Re: 'Variants' and Chromosome Modelling

2013-03-21 Thread Michel Dumontier
On Thu, Mar 21, 2013 at 6:00 PM, Jeremy J Carroll wrote: > > Jerven suggests: > > "instead of saying chrM it would have been solved by > using > http://my.lab.org/confidential/patientXXYYZZ/genome/sampleXX/ChrM/assemblyTTv43/VariantCalls5 > " > > rather than continuing the philosophical/theologic

Re: 'Variants' and Chromosome Modelling

2013-03-21 Thread Joachim Baran
On 2013-03-21, at 6:00 PM, Jeremy J Carroll wrote: > "instead of saying chrM it would have been solved by > using > http://my.lab.org/confidential/patientXXYYZZ/genome/sampleXX/ChrM/assemblyTTv43/VariantCalls5"; > In this way of thinking, I am not really interested in an assembly of ChrM > for

'Variants' and Chromosome Modelling

2013-03-21 Thread Jeremy J Carroll
Jerven suggests: "instead of saying chrM it would have been solved by using http://my.lab.org/confidential/patientXXYYZZ/genome/sampleXX/ChrM/assemblyTTv43/VariantCalls5"; rather than continuing the philosophical/theological threads …. I am interested in this practical question. chrM as an ad