Re: Computers may predict drugs’ side effects

2012-06-12 Thread Bob Futrelle
The emphasis has to be on the word "May". There's a long road ahead. - Bob Futrelle BioNLP.org

Re: Computers may predict drugs’ side effects

2012-06-12 Thread Oliver Ruebenacker
Hello David, On Tue, Jun 12, 2012 at 12:58 PM, David Wild wrote: > Here it is -- bad name lookup on our part for sulfuric acid - using CID > instead 1118 > > http://cheminfov.informatics.indiana.edu:8080/slap/slap.jsp?cid=1118&gene=Insulin > > Note the direct relationship is removed in the s

Re: Computers may predict drugs’ side effects

2012-06-12 Thread David Wild
Here it is -- bad name lookup on our part for sulfuric acid - using CID instead 1118 http://cheminfov.informatics.indiana.edu:8080/slap/slap.jsp?cid=1118&gene=Insulin Note the direct relationship is removed in the subgraph / calculation to show indirect prediction. David

Re: Computers may predict drugs’ side effects

2012-06-12 Thread Oliver Ruebenacker
Hello, On Tue, Jun 12, 2012 at 12:32 PM, David Wild wrote: >> Hopefully, in the future, we will be able to simulate, for a given >> chemical structure: >> >>  - which proteins (or other bio-molecules) it interacts with >>  - how that interaction changes the function of the bio-molecule >>  -

Re: Computers may predict drugs’ side effects

2012-06-12 Thread David Wild
> > Hopefully, in the future, we will be able to simulate, for a given > chemical structure: > > - which proteins (or other bio-molecules) it interacts with > - how that interaction changes the function of the bio-molecule > - how changed function of molecules change biological networks and > sy

Re: Computers may predict drugs’ side effects

2012-06-12 Thread Oliver Ruebenacker
Hello On Tue, Jun 12, 2012 at 11:49 AM, Lin MD, Simon wrote: > Hi Joanne, > > Thank you for sharing this topic with the group! For discussion, I am > attaching the manuscript and a related review article. Yes, thanks for sharing, very interesting! > Generally, the prediction models work

Computers may predict drugs’ side effects

2012-06-12 Thread Joanne Luciano
FYI I know some of you would be interested in this -- and maybe some of you know more details that can be shared? http://articles.boston.com/2012-06-11/business/32177397_1_side-effects-adverse-drug-reactions-study-of-drug-development Joanne