Hi Oliver,
Thanks for the link. I'll have a look and get back to you soon.
Many thanks
Sarala
> Hello Sarala,
>
> We created SBPAX, an extension to BioPAX to integrate quantitative
> data and build a bridge to modeling. SBPAX is in line to become part
> of BioPAX, and is supported by two
Hello Sarala,
We created SBPAX, an extension to BioPAX to integrate quantitative
data and build a bridge to modeling. SBPAX is in line to become part
of BioPAX, and is supported by two popular databases and by upcoming
versions of the Virtual Cell.
If there is anything you need that SBPA
Hi Lena,
I'm working on semantic interoperability of data and models. As part of
this work, I have converted all curated sbml models in biomodels into RDF.
It would be good to see what you have done, may be see were we can
collaborate. I'm in the process of documenting my work but you can find
the
Hi Lena,
We are interested in querying the underlying model representation as well.
We want to be able to run SPARQL queries on different types of model/data
repositories eg. cellml. It is not always possible to convert some of the
model/data we work with to BioPAX. Our rdf schema consists of a ge
Hi Michel,
Not at the moment but we are hopping to address this as well.
Cheers,
Sarala
> Sarala,
> Do you convert/extract the (MathML) kinetic expressions?
>
> m.
>
> On Mon, Jun 25, 2012 at 10:12 PM, wrote:
>
>> Hi Lena,
>>
>> We are interested in querying the underlying model representatio
Sarala,
Do you convert/extract the (MathML) kinetic expressions?
m.
On Mon, Jun 25, 2012 at 10:12 PM, wrote:
> Hi Lena,
>
> We are interested in querying the underlying model representation as well.
> We want to be able to run SPARQL queries on different types of model/data
> repositories eg.
Hello Sarala,
This is great - naive question: is there a reason why you didn't go with
the biopax representation?
Best,
Lena
On Mon, Jun 25, 2012 at 10:46 AM, wrote:
> Hi Lena,
>
> I'm working on semantic interoperability of data and models. As part of
> this work, I have converted all curated
Mike,
This might be of interest to harmony/combine folks - which mailing lists
might Lena post to do indicate she will be presenting on this topic?
m.
On Fri, Jun 22, 2012 at 12:09 PM, Me wrote:
> Hi Michael,
>
> My plan for the next telco is to have a much MUCH more hands-on focus
> than wh
Hi Michael,
My plan for the next telco is to have a much MUCH more hands-on focus than
what we've had so far. Me and Laleh (my PhD student) are creating RDF
representations of SBML models so that we can visualize with google fusion
tables. We hope to have something to show by next telco.
Be
Dear all,
Please join me for the next semantic systems biology telco, today at 11AM
EST. Michel Dumontier will present his work on ontologizing SBML.
Thanks!
Dial-In #: +1.617.761.6200 (Cambridge, MA) VoIP address:
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