Re: NDF-RT and Canada

2013-09-20 Thread Marc Dumontier
thanks Richard and Michel Very helpful, I'm sure I will have more questions soon. Marc On Fri, Sep 20, 2013 at 8:08 PM, Richard Boyce wrote: > Hi Marc, > > Attached is a script that will get all DDIs from NDF-RT using a query to > the Bioportal SPARQL endpoint. The data is output to as a dict

Re: NDF-RT and Canada

2013-09-20 Thread Richard Boyce
Hi Marc, Attached is a script that will get all DDIs from NDF-RT using a query to the Bioportal SPARQL endpoint. The data is output to as a dictionary to a Python pickle. wrt mapping, one thing I know about NDF-RT is it uses salt forms as the primary label for many of its drugs so mapping re

Re: NDF-RT and Canada

2013-09-20 Thread Michel Dumontier
a thanks Mark !!! m. On Fri, Sep 20, 2013 at 12:22 PM, Mark wrote: > Michel, I love how comprehensive your responses are! I always learn from > them and I really should take a lesson from you in this regard vv my own > projects! :-) > > M > > > > Michel Dumontier wrote: >> >> Hi Marc, >>

Re: NDF-RT and Canada

2013-09-20 Thread Michel Dumontier
Also, Rich Boyce has done some work [1] to map SPL to Bio2RDF and other resources, and Chris Chute showed how to map to ndf-rt and rxnorm [2] [1] http://www.ncbi.nlm.nih.gov/pubmed/23351881 [2] http://www.ncbi.nlm.nih.gov/pubmed/23256517 m. On Fri, Sep 20, 2013 at 10:17 AM, Michel Dumontier < m

Re: NDF-RT and Canada

2013-09-20 Thread Mark
Michel, I love how comprehensive your responses are! I always learn from them and I really should take a lesson from you in this regard vv my own projects! :-) M Michel Dumontier wrote: >Hi Marc, >DrugBank offers mappings to DPD. you can access drugbank data in RDF >with >Bio2RDF. > >bio2r

Re: NDF-RT and Canada

2013-09-20 Thread Michel Dumontier
Hi Marc, DrugBank offers mappings to DPD. you can access drugbank data in RDF with Bio2RDF. bio2rdf.org/datasets/drugbank - summary page http://drugbank.bio2rdf.org/fct - faceted browser http://drugbank.bio2rdf.org/sparql - sparql endpoint http://download.bio2rdf.org/current/drugbank/ - rdf fil

NDF-RT and Canada

2013-09-20 Thread Marc Dumontier
Hi Is anyone aware of any open work done on querying data out of NDF-RT, or some informative literature on anyone mapping Canadian drugs to it? I've been asked to match as many Canadian drugs from the Health Canada Drug Product Database (DPD) to equivalent formulations in the NDF-RT Once I have