Re: Reviewing the Banff demo ontology infrastructure

2007-06-17 Thread Alan Ruttenberg
On Jun 11, 2007, at 8:40 AM, Chimezie Ogbuji wrote: 3) How are information resources (e.g. the very abstract ‘database entry’, or the slightly less abstract ‘XML document associated with a database entry’) best represented in BFO-friendly ontologies? In my most recent revision, I line [

RE: Reviewing the Banff demo ontology infrastructure

2007-06-11 Thread Kashyap, Vipul
> "Evidence" is important, but is complex. If evidence is from > collection of facts, then exactly how do those facts provide the > evidence (there are many types of analyses you can do on raw data to > produce evidence). So evidence is a function of the facts, the > analysis method, the method o

Re: Reviewing the Banff demo ontology infrastructure

2007-06-11 Thread Chimezie Ogbuji
On Sun, 2007-06-10 at 22:20 +0200, [EMAIL PROTECTED] wrote: > Reviewing the Banff demo ontology infrastructure > 1) What relations do we use to connect a biological entity with artificial > entities describing it, e.g. ‘protein records’, ‘sequence records’, ‘Pubmed > records’? I've been using t

RE: Reviewing the Banff demo ontology infrastructure

2007-06-11 Thread Daniel Rubin
At 09:43 PM 6/10/2007, Kashyap, Vipul wrote: Matthias, Thanks for the well organized e-mail, This is clearly one area where the HCLSIG community can provide some feedback. Chimezie had similar constructs related to "Patient Records" in his POMR. Let's try to distill out some issues so that

RE: Reviewing the Banff demo ontology infrastructure

2007-06-10 Thread Kashyap, Vipul
Matthias, Thanks for the well organized e-mail, This is clearly one area where the HCLSIG community can provide some feedback. Chimezie had similar constructs related to "Patient Records" in his POMR. Let's try to distill out some issues so that HCLSIG/BIONT can give some feedback on this: 1. S

RE: Reviewing the Banff demo ontology infrastructure

2007-06-10 Thread Eric Neumann
Matthias, I think you raise some very important points for tomorrow's discussion (and I'm sure this will need more than one call to address them sufficiently). It would be great if you could try and deal with just a few of of the most important relations (some which you noted already), rather