I don't understand how these work at all. Is there any straightforward
way, given a structure's position and dimensions and the desired camera
position, to calculate the ideal position for the plane? How does
PyMOL decide where to put the planes? Right now I'm missing by a small
amount and at
alter eys/,type='ATOM'
sort
The problem is that, by default, PyMOL doesn't create ribbons for HETATMs
(typically ligands and solvent). With the above command, you're converting
selenocysteine residues into regular atoms and sorting them into place so that
they can be included in the ribbon.
C
Hi everybody
I have the structure of a Molybdo-CODH (CO-Dehydrogenase), which contains a
Seleno-Cysteine as Ligand for the active site cluster (see 1QJ2.pdb)
The residue b/388 is denoted as EYS in the pdb file.
In the cartoon representation, pymol does not display this part of the backbone
(I get
