Thanks Ezequiel,
that was the problem! The rendering of lines occluded rendering of the
sticks below certain stick radius. Thanks for spotting the problem.
Cheers,
-Viktor
On Thu, 2002-12-05 at 14:17, Ezequiel H. Panepucci wrote:
> Viktor,
>
> maybe pymol is also ray tracing the lines which ha
Hello,
I have uploaded a new version of the tutorial:
http://pymol_tutorial.tripod.com/
There isn't much new if you have seen it before, I have added a small
section on stereo views and hydrogen bonds.
Those people mirroring this are welcome to update.
Another question regarding hetatms,
using my
SAMPEG:
http://rachmaninoff.informatik.uni-mannheim.de/sampeg/
Works beautifully- very high quality movies most of the time. I've fully
automated animations with PyMOL this way. Images need to be converted
into Targa format first, but this is pretty standard.
--
Viktor,
maybe pymol is also ray tracing the lines which have a fixed
rendered radius. the fix for this is to "hide lines, (selection)"
where selection is the atoms/bonds you want represented as thin sticks.
zac
Viktor Hornak wrote:
I've noticed another minor problem with internal raytracer: w
I've noticed another minor problem with internal raytracer: when I set
stick radius to some smaller value (say: set stick_radius=0.05) and
raytrace the model: the raytracer seems to have its own idea about stick
radius, i.e. the changes don't seem to correspond to regular opengl
rendering. In other
Laurence,
This is a bug I found a couple of days ago and remedied -- the 3D hash code
in the raytracer was faulty. In the meantime, you may want to render with
PovRay. Would you please send me a quick email (off the list) with your
version and platform information so that I will know the e
Fellow PyMOL enthusiasts,
I'm getting a weird problem when I make 'stick' pictures rendered with
the built-in PyMOL ray-tracer. Sometimes (but not always ?!?!?) the tips
of some sticks come out as jagged and incomplete, instead of having
smooth rounded ends. This doesn't look like a problem wi
> do you have any recommendations for a program under linux that assembles all
> the individual png pictures into a movie for a PowerPoint/OpenOffice
> presentation?
Dear Dirk,
I have tried mpeg_encode from Berkeley very successfully.
Its a command-line tool that makes a MPEG-1 movie from a s
