[PyMOL] transforming all atoms by a matrix

Hello, I have two questions: 1. I want to superpose object1 and object2 on top of each other, and have derived a rotation matrix to transform object2 by. How do I apply this matrix to all its atoms? Either I parse its PDB coordinates, multiply them by the matrix, and load the object (which can be

[PyMOL] Movie script

Hi List! I'm trying to make some movie script. I read a bit about in several places. By now I'm almost getting what I want, but I need help, follows my partial script: --- del all load c1/forcedin.pdb,c1 load c2/forcedin.pdb,c2 frame 1 hide all run Pymol/stride_ss

[PyMOL] turn light routine

I'm having a problem with the routine described a few months ago for rotating the direction of the light source when the picture is rotated for making a stereo pair. The problem is as follows : PyMOL>run turn_y_light.py Traceback (most recent call last): File "/Applications/PyMOL/Darwin/modu

[PyMOL] rotate light routine

I'm trying to run the routine described a few months ago for rotating the light source when rotating a picture to give stereo, and I keep hitting an error that I do not understand, as follows :. PyMOL>run turn_y_light.py Traceback (most recent call last): File "/Applications/PyMOL/Darwin/modu