Frank,
PyMOL's atom selection language is based on logical operators over sets of
atoms.
"and" is the intersection and "or" the union. You're looking for
create forst2, (resi 1 or resi 32 or resi 356)
Using macros, this can be reduced to:
create forst, 1+32+356/
Please see the manual:
Thanks a lot! I have a another question. Is there
way to define a group of residues which are not linked
to each other. I tried
create forst2, (resi 1 and resi 32 and resi 356)
but it doesn't work. Thanks, Frank
--- Morri Feldman wrote:
> Dear Frank,
>
> try:
>
> create forSticks1, res
You's guys!
Spurred into action by the flurry of movie questions, I thought I'd
chime in. Well, I kept touching this up so it never quite seemed
done, but here is a version that does some nice movie stuff.
Basically, I've modified the camera_view routine that Laurence Pearl
submitted not to
Users,
Yes, I've come to the conclusion that the movie commands are inadequate for
what people need and want. My plan is to implement a dedicated camera
matrix for each frame, and optionally, a chain of matrices for each
molecular state, so that complex animations can be generated without
resorti
Hello:
This can indeed by done using the mdo command:
mdo 1: move z, 5;move x, 1.9;move y, 1.3
You can work accel or decel in using a loop in a python script or even a
perl script that spits out the mdo commands.
Alternativly if you want to move only a single chain or object instead of
the whole
Hmmm, I've been wanting to do the exact same thing, and I'd reached the
conclusion that the only way to do it would be to write a Python script.
I'd be happy to share it when (if) it gets written (perhaps this week,
since I'm stuck without real work for now).
Ideally, it'd be nice to have even mor
Jose Avalos wrote:
Dear all,
Is it possible to do a movie in which you start looking at the entire
enzyme and then you zoom into the active site and finally alternate
between different states? If so, can somebody please point me in the right
direction?
Thank you very much
Jose Avalos
It cer
Nuno,
For a couple of reasons, I curently believe that electrostatic calculations
based on point charge models are not valid near or within the protein surface
-- you need to be at least one atom radius beyond the molecular envelope in
order to draw physically meaningful interpretations.
Why
Dear all,
Is it possible to do a movie in which you start looking at the entire
enzyme and then you zoom into the active site and finally alternate
between different states? If so, can somebody please point me in the right
direction?
Thank you very much
Jose Avalos
How do i improve the surface triangulation of isopotential surfaces? The
isosurface triangulation near the protein is very poor and is independent
of the grid size chosen in MEAD.
Thanks for your attention.
--
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,ø¤º*`*º¤ø,¸¸,ø¤º*`*º¤ø,¸¸,ø¤º*`*º¤ø,
N
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