Re: [PyMOL] loading electrostatic maps generated with apbs

2004-05-13 Thread Cameron Mura
hi Michael et al., I'm still unable to visualize DX-formatted electrostatics maps in PyMOL, as described in my earlier email (attached). I've tried various scenarios to get this to work, including the following: (1) fresh, clean install of the pymol-0.95-1.rh90.py22 RPM, downloading the var

Re: [PyMOL] loading electrostatic maps generated with apbs

2004-05-13 Thread Michael George Lerner
Hi, My code should work again. The parsing errors were probably caused by the fact that my code was out of date with respect to the current CVS version of PyMOL. Please let me know if it doesn't work! Thanks, -michael > Has anyone had luck with loading DX format electrostatic potential maps >

RE: [PyMOL] Moving Objects

2004-05-13 Thread Warren DeLano
Yes, Assuming you're running 0.95: Put the mouse into Editing Mode (Mouse menu or click on the mouse "matrix"). Insure that no atoms are currently picked (i.e. there are no "pk" selections). Click "unpick" if there are... You can now independently rotate and translate objects with shift-left-c

[PyMOL] trouble with Pmw?

2004-05-13 Thread Michael George Lerner
Hi, I don't know much abotu Pmw, but when I compile the CVS version of PyMOL and the included version of PMW (1.1) with python 2.3, things break a bit. When I run pymol, the main window shows up but the gui doesn't. I get a traceback that ends with File "/home/mlerner/pymol/modules/Pmw/Pmw_1_

Re: [PyMOL] Powermate dial with Pymol on OS X

2004-05-13 Thread Douglas Kojetin
A great many thanks for this -- I went out to the local Apple store and purchased a Powermate specifically for this - and it's awesome! Now I just need to work on programming it to interface with NMRView ... Doug On May 6, 2004, at 4:50 PM, William Scott wrote: Thanks, Ezequiel! That is e

RE: [PyMOL] Rotation of maps when aligning

2004-05-13 Thread EPF (Esben Peter Friis)
Hi Tsjerk > Another (temporary) solution, which shouldn't be too hard to > implement, > would be the ability of 'glueing' the colors to the object. That is, > bind the color for each atom in the object, originating from > the map, to > that atom. That's not quite enough. The surface colors

RE: [PyMOL] Updated OpenGL Hardware Recommendations

2004-05-13 Thread EPF (Esben Peter Friis)
Hi Peter I'm very happy with the cheap "gamers glasses". They are light, much lighter than the old CrystalEyes we have for our SGI-systems, and also more reliable (ie. when they dont work, they just need new batteries :-) The batteries (CR2016) have less capacity than the ones in CrystalEyes