Hello, Frank.
I have done this and created a web page to tell others how to do it. I used
the Uppsala Software Factory program LSQMAN to generate structures that morph
from one structure to another. This is quick and easy and can be done on
your own computer. The intermediate structures shou
Hi,
I am a new user of PyMol. I work with spherical virus structures and
some of my questions could be specific to these structures :
1) I am trying to get a cut away view of the density and the plane where
the cut is made is always shaded in black color. I would like it to be
some shade of th
If you have the molecules "mol01" and "mol02" open, you can type "mol_list
= cmd.get_names()" to get the list of molecules put into the variable
mol_list: ['mol01' ,'mol02'].
Now let's say you've got those two molecules open and you've made some
selections within those two molecules. The GL wi
> areas of the protein that undergo movement and show general trends. There is
> also a server at Yale (http://www.molmovdb.org/molmovdb/ ) that will perform
> simulated annealing while morphing between two structures, thereby producing
> intermediate structures that violate fewer protein restrain
