[PyMOL] pymol & apbs - "surface numbers"

2005-03-17 Thread Kristoffer Winther Sørensen
Douglas Kojetin asked the following question on February 9, 2005: >For example, the molecular surface "numbers" default to >-1, 0 and 1. If they are changed to -5, 0 and 5, the displayed surface >looks "less charged" than that displayed with the default numbers. >What do the numbers mean? I'm no

Re: [PyMOL] surfaces and transparency

2005-03-17 Thread Paula Salgado
I tried the transparency to 0.5 suggestion and couldn't get to work... may be I'm doing it wrong... from the replies I got and looking at the options, I got the impression you can only have transparency in 2 different objects if they are represented in different ways - is taht the case? what I was

[PyMOL] Re: default color

2005-03-17 Thread Sebastien Moretti
Hello, The setting menu doesn't seem to save the changes we do in it. So, I seek for the file where default color is coded, e.g. for cartoon, to save my changes. I use PyMOL 0.97 on Linux OS. Thanks I found a way to resolve it in the old e-mails of the mailing list. Create a $HOME/.pymolrc fi