[PyMOL] Java Anyone?

2005-08-25 Thread Warren DeLano
PyMOL Users: We are looking to identify a few collaborators with existing Java application (not applet!) development efforts already in progress that would be ripe for inclusion of a simple real-time molecular visualization component. If this is you, then please make contact at your convenience a

[PyMOL] Java extension? (was question about _cmd.pyd)

2005-08-25 Thread Peter Adrian Meyer
> Why don't we? Because we do most PyMOL development on Mac OS and Linux, > using free or open-source tools, such as GCC, GDB, and Apple's wonderful > XCode, with CHUD and OpenGL profilers. Even on Windows, we are now > bypassing Microsoft Visual Tools altogether and using MingW and GCC to > bui

RE: [PyMOL] Overlapping surfaces

2005-08-25 Thread Warren DeLano
Hugues, 1) PyMOL will not render identical overlapping surface triangles correctly -- it is a weakness in the current algorithm. 2) If the surfaces are truly distinct are distinct, then you'll only see one of the unless you select multilayer transparency, in which case you'll see both sides of

[PyMOL] RE: [PyMOL] Re: RE: [PyMOL] ques tion about _cmd.pyd

2005-08-25 Thread Warren DeLano
Wen, For questions relating to development and debugging of native Python extensions under Windows, I suggest heading over the main Python web site and mailing lists. We don't have any expertise in that area. Why don't we? Because we do most PyMOL development on Mac OS and Linux, using free

[PyMOL] Overlapping surfaces

2005-08-25 Thread Hugues Nury
Hi, I have a problem raytracing an image with overlapping surface. Ok I have a protein and a lipid close to it, I draw surfaces (transparency .7) of both, and there are slightly overlapping. To see the whole lipid surface, I have to hide and show again the protein, otherwise the ovelapping par