[PyMOL] Listing Polar contacts

Hi list, Is there any method to list all polar contacts found in a protein? Thanks Fred

[PyMOL] pymol problems with python after FC4 update

After running a routine update on my FC4 box that included updates to X11, launching Pymol causes one of two things: 1. X completely crashes and must be killed from a remote login to regain system control. 2. Pymol manages to launch with the following messages: [stu...@localhost installs]$ py

RE: [PyMOL] test in pymol scripting language

Use Python blocks! > Something like that: > if (count_atoms nt) == 0 > then cmd.delete("nt") if cmd.count_atoms("nt") == 0: \ cmd.delete("nt") Note the explicit use of "continuation" lines via backslashes. This ensures that PyMOL hands over both lines to the Python interpreter

[PyMOL] test in pymol scripting language

Hello, Is there a way to use test commands in pymol scripting language ? Something like that: if (count_atoms nt) == 0 then cmd.delete("nt") Thanks -- Sébastien Moretti http://www.igs.cnrs-mrs.fr/ CNRS - IGS 31 chemin Joseph Aiguier 13402 Marseille cedex

[PyMOL] Need Help with Stereo L/R Confusion

Folks, We are trying to track down and hopefully resolve a problem with the left and right images getting confused in stereo mode with PyMOL. I think this problem is limited to nVidia Quadro cards, but need more info. So... If (and only if) you use PyMOL in hardware stereo mode (with shutter gl