Re: [PyMOL] displaying solvent mask? (solution)

2005-10-31 Thread Peter Adrian Meyer
Should anyone else ever need to try this, there turns out to be a very easy way to do it, assuming that your solvent mask is in ccp4 mask format. 1. use mapmask mskin $MASKFILE mapout $CONVERTED_FILE 2. load $CONVERTED_FILE into pymol, treating it as a normal map. Contouring at 1.0 will display

[PyMOL] displaying solvent mask?

2005-10-31 Thread Peter Adrian Meyer
Hi pymol users, Has anyone had any sucess in loading and displaying solvent masks in pymol? Checking the list archives and wiki didn't result in anything; neither did google. "help mask" within pymol seems to be talking about selection stuff. It seems like the best way would be to modify the cc

RE: [PyMOL] Selection of DNA backbone or base pairs

2005-10-31 Thread Grégori Gerebtzoff
Hi Jim, I am not aware of such functionality, but I posted some time ago a script to generate cgo objects to render DNA molecules; maybe you can adapt this script for your needs... Have a look here: http://sourceforge.net/mailarchive/message.php?msg_id=12611100 Regards, Greg -Original Mes