Re: [PyMOL] Viewing cavities?

Marcus, Here is one way (courtesy Kyle Lassila): Check out VOIDOO: http://xray.bmc.uu.se/usf/voidoo.html Then: Use VOIDOO to make a map of the cavity. That gives a map in one of the electron density formats, .ezd. Then use MAPMAN (also found as Uppsala Software Factory) to convert to .ccp

RE: [PyMOL] cmd.quit() kills pymol together with the external python launcher

PyMOL can't be stopped and restarted within a Python -- it terminates the process. However, you can hide the graphics window as needed... cmd.window("hide") cmd.window("show") (in the future, pymol2 will support class-like behavior.) Cheers, Warren -- Warren L. DeLano, Ph.D.

Re: [PyMOL] Viewing cavities?

Marcus, Here is one way (courtesy Kyle Lassila): Check out VOIDOO: http://xray.bmc.uu.se/usf/voidoo.html Then: Use VOIDOO to make a map of the cavity. That gives a map in one of the electron density formats, .ezd. Then use MAPMAN (also found as Uppsala Software Factory) to convert to

[PyMOL] (no subject)

To all: I am new to PyMol, and to structure programs in general. I am trying to build a beta sheet from a peptide molecule in the pdb. I can't seem to load more than one molecule at a time, and I do not see any instructions related to it in the manual. I am running version 0.98 beta 32 on a M