Re: [PyMOL] Has anyone got apbs 0.4 to work with the pymol apbs plugin?

2005-12-21 Thread Michael George Lerner
On Wed, 21 Dec 2005, William Scott wrote: Dear Michael: Thanks. It works great. Sorry that I stupidly didn't think to check it. No problem. I'm glad it works. Almost everything should be the same. APBS has a new required parameter, sdens (Vacc sphere density) that I've added to the con

Re: [PyMOL] Has anyone got apbs 0.4 to work with the pymol apbs plugin?

2005-12-21 Thread William Scott
Dear Michael: Thanks. It works great. Sorry that I stupidly didn't think to check it. If you permit me one whine, I still need to use pdb2pqr (new version of that too) in order to do this with nucleic acids. All the best, Bill On Tue, 20 Dec 2005, Michael George Lerner wrote: > > There's a

[PyMOL] Correction: X server to crashes, when working with pymol

2005-12-21 Thread bgbg bg
Correction, the X server crashes on each attempt to resize the pymol window On 12/21/05, bgbg bg wrote: > > Hello, list. > This is my setup: > Mandriva Linux 2006.0, > X Window System Version 6.8.99.900 (6.9.0 RC 0) > X Protocol Version 11, Revision 0, Release 6.8.99.900 > Build Operating System:

[PyMOL] X server to crashes, when working with pymol

2005-12-21 Thread bgbg bg
Hello, list. This is my setup: Mandriva Linux 2006.0, X Window System Version 6.8.99.900 (6.9.0 RC 0) X Protocol Version 11, Revision 0, Release 6.8.99.900 Build Operating System: Linux 2.6.12-12mdksmp i686 [ELF] I used PyMol 0.98 both installed from Mandriva's rpm's and from sources. The problem

[PyMOL] Re: PyMOL-users digest, Vol 1 #1088 - 1 msg

2005-12-21 Thread Stephen Graham
It worked for me just yesterday. You should download the new version of the plugin (http://www-personal.umich.edu/~mlerner/PyMOL/apbs_tools.py) and replace the old (it should be located in $PYMOL_PATH/modules/pmg_tk/startup/ but on my Debian sarge system it can be found in found at /usr/lib/python