Re: [PyMOL] Selecting residues on surface only

2006-01-12 Thread Charlotte Habegger-Polomat
Thanks Jerome! It worked! I also checked out your website and your tutorial in French. They're both great! -Charlotte From: Jerome PANSANEL To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Selecting residues on surface only Date: Wed, 11 Jan 2006 17:26:55 +0100 Hi, Le Mercredi

[PyMOL] make movie without invoking GUI

2006-01-12 Thread Qingyi Yang
Hi, Is it possible to make a series of png without invoking GUI? I tries like this: >>pymol -c makemovie.py but it gave "MoviePNG-Error: Missing rendered image.". Thanks a lot!! Bests, Joy __ Do You Yahoo!? Tired of spam? Yahoo! Mail has the b

[PyMOL] DALI alignment visualization

2006-01-12 Thread Eva Vanamee
I have a set of structures that are structurally aligned to a template structure by DALI. DALI provides the transformation matrices so I can transform mol A to mol B. I was wondering if anyone had a clever phyton script to do this for not just a pair but for many at once. Thanks in advance, - E

Re: [PyMOL] make movie without invoking GUI

2006-01-12 Thread Jason Thomas Maynes
You have to put: set ray_trace_frames=1 in the script. Cheers, JTM "We can be sure that if a detailed understanding of the molecular basis of chemo-therapeutic activity were to be obtained, the advance of medicine would be greatly accelerated." Linus Pauling, Nobel Laureate 1954 "...everyth