[PyMOL] Unix launch script "./pymol.com" becoming "./pymol"

2006-02-02 Thread Warren DeLano
Some advanced warning... For those keeping current via CVS, building from source, or installing precompiled unix binaries, here is a quick "heads up!" intended to save you some minor grief: For the last six years, the PyMOL launch script has been called "pymol.com" instead of simply "pymol". I c

[PyMOL] manual docking problem

2006-02-02 Thread Vincent Chaptal
Hi, I have a little problem with manual docking. I load 2 pdb as 2 different objects. I define the mouse in editing mode and shift+left-click to turn and shift+middle-button tu drag. unfortunatly, the molecule splits in two and loops and helices streches to follow one piece of the protein.

Re: [PyMOL] Can't figure out APBS

2006-02-02 Thread Sandra MG Dias
Hi! You have to see if you are getting the .dx file. The default of the program is to put it at the same directory where it was installed, along with the other temporary files: .in, .pqr and .pdb. In case of not, I got the same problem and the solution was: the PDB that you load can`t have c

Re: [PyMOL] Can't figure out APBS

2006-02-02 Thread Brian Kelch
In addition to the stipulations listed below, I have also noticed that apbs can't handle a pdb file that has coordinate columns that touch each other such as this example: this column V ATOM 78 N GLY A 38

[PyMOL] Re: [o-info] RE: [ccp4bb]: Current Stereo 3D Display Info

2006-02-02 Thread Morten Kjeldgaard
these displays for a rainy day. I've just given up on stereo and switched to using higher-end LCD displays. Less energy, less heat, and less eye fatigue for me. Let me quote myself from a posting to o-info from September 1994: > Real men don't Use Stereo A few hours later, Eleanor replie