[PyMOL] transparency and cgo

2006-07-05 Thread Terry Jones
Is there any way to specify / produce transparency when using CGO in pymol? It doesn't look like it, but I thought I'd ask Terry

Re: [PyMOL] Movie to Powerpoint

2006-07-05 Thread Jason Thomas Maynes
Best one I have found is mpeg_encoder from Berkeley, free but runs on linux Also Adobe premiere but $$$ Cheers, JTM We can be sure that if a detailed understanding of the molecular basis of chemo-therapeutic activity were to be obtained, the advance of medicine would be greatly accelerated.

Re: [PyMOL] transparency and cgo

2006-07-05 Thread Terry Jones
Zheng == Zheng Yang proteiny...@gmail.com writes: Zheng Try this: set cgo_transparency, VALUE, CGO-OBJECT NAME Zheng e.g. set cgo_transparency, 0.5, Sphere Hi Zheng Thanks for your answer, that works well (note for others: pymol 0.99 seems required, the command is not recognized under 0.98).

Re: [PyMOL] Movie to Powerpoint

2006-07-05 Thread Joel Tyndall
Video mach seems to work chiradip chatterjee wrote: Hi Friends I am a new Windows pymol user. I made a movie in Pymol and saved the 120 ray traced *.png frames. Now I want to convert the *.png files to MPEG files and then directly convert/run the movie in the Powerpoint presentation. can anyone

[PyMOL] How do you show the coordinates of an atom?

2006-07-05 Thread John Anderson
Hello, I'm relatively new to pymol and been scratching my head over a problem I've had for a several days. I would appreciate it if anyone could help. I'm trying to show the coordinates of a selected atom. Lets say you click on an atom and select it. How do you then show its coordinates in