The problem with animated gif is the color limitation to 254 + one
transparent colors, whereas PyMOL generated png's have millions of colors +
alpha channel...
-Original Message-
From: Karsten Seidel [mailto:k...@nmr.mpibpc.mpg.de]
Sent: jeudi, 6. juillet 2006 18:15
To: pymol-users@lists
I've just installed pymol 0.99rc6 on Mac OS X (10.3.9). Because I'm still
running Panther and I no longer have the system python installed (instead I
have 2.4) I couldn't use macpymol-0_99rc6.tar.gz as pymol no longer comes
with its own copy of python. macpymol-0_99rc6.tar.gz fails trying to load
s
Hi all
I have some errors if I run script:
PyMOL>run c:\pict.pml
Traceback (most recent call last):
File "C:\Program Files\DeLano Scientific\PyMOL/modules\pymol\parser.py",
line 273, in parse
parsing.run_file(exp_path(args[nest][0]),pymol_names,pymol_names)
File "C:\Program Files\DeLano Scie
Hi there,
first of all, let me say hello to all list subscribers, as I'm new here.
I've been evaluating PyMOL for a couple of months now, coming from Molmol.
Chiradip, one option next to creating an MPEG file is to make an
animated GIF. Unfortunately, I don't know a free program under Windows
For this purpose I've been using mencoder (http://www.mplayerhq.hu) which is
open source and gives access to a wide range of codecs (mpeg-1, mpeg-2,
mpeg-4 (divx), realmedia, mov, avi, asf, flash etc). Here is the batch file
I used to encode a video in two-pass divx encoding (the frames were in the
That's not a very helpful response, as it may not be clear how one maps an
atom selection in Pymol to the corresponding line in a PDB file.
To print out the coordinates within Pymol, you need to use the command
iterate_state, e.g.:
iterate_state 1, , print x,y,z
Where is the name of the objec
I am trying to install pymol on an Athlon 64 running Fedora Core 5 Linux
(64 bit). When I try
python setup.py build
I get the following error:
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -
On Wed, Jul 05, 2006 at 04:33:16PM -0400, John Anderson wrote:
> or are the coordinates in the pdb file?
They are, yes.
--
D. Joe
Terry,
You can also embed the transparency (ALPHA) value into your cgo file like
this:
from pymol.cgo import *
obj = [
BEGIN, LINES,
LINEWIDTH, 15,
ALPHA, 0.6,
VERTEX, 0.56, -0.88, 5.75,
VERTEX, -1.18, -0.99, -6.88,
END
]
Cheers,
Greg
There some cool free tools out there in cyberspace, one of them is Slide
Show Movie Maker by Joern Thiemann
http://www.joern-thiemann.de/tools/SSMM/index.html
Although it is not meant as a live movie maker but for slide shows, it
just a matter of frames pr. second, right ;-)
First you need to co
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