[PyMOL] ray trace density

2006-09-28 Thread Brian Mark
Hello everyone, I apologize in advance if this has been asked recently, but I could not find an answer to it on-line anywhere. We are, for the first time, using pymol to make figures that show electron density in addition to the model. No problem making the figure, but when we go to ray-tra

Re: [PyMOL] Suse 10 and PyMOL crashes

2006-09-28 Thread Peter Adrian Meyer
> Thanks for the reply. "Irretrievably crashing" means that everything stops dead. The screen freezes, mouse/keyboard become unresponsive, the machine becomes unreachable (via ssh or even ping) from other > workstations. Background processes instantaneously halt. A 'proper' crash in other words!

Re: [PyMOL] Suse 10 and PyMOL crashes

2006-09-28 Thread Neil Ranson
Thanks for the reply. "Irretrievably crashing" means that everything stops dead. The screen freezes, mouse/keyboard become unresponsive, the machine becomes unreachable (via ssh or even ping) from other workstations. Background processes instantaneously halt. A 'proper' crash in other words!

Re: [PyMOL] Suse 10 and PyMOL crashes

2006-09-28 Thread Peter Adrian Meyer
Hi, > I have tried 0.99 rc6 and rc7, and the 1.00 beta 01 that is described as > "for testing on 64-bit linux", all with the same result. PyMOL appears > to start normally Good troubleshooting procedureI've had no problems w\ 0.99rc9 on suse 10.0 (single cpu though...so smp/threading issues w

[PyMOL] Suse 10 and PyMOL crashes

2006-09-28 Thread Neil Ranson
Dear All, Has anyone come across issues running PyMOL on suse linux 10.0? I have just 'upgraded' from Windows, and am running: Suse Linux 10.0 Dual Opteron 275, 4Gb RAM Nvidia 6600GT KDE version: 3.4.2 Level "b" 2.6.13-15.12-smp x86_64 and am having real problems. I have tried 0.99 rc6 and

Re: [PyMOL] PowerbookG4 z-screen stereoenabler

2006-09-28 Thread Florian Nachon
On Sep 28, 2006, at 9:51 AM, vanra...@usc.es wrote: as far as I understand it, this is not possible. To run stereo on a Mac you need the powermac quad G5 with NVIDIA FX4500 graphics card. I´m not even sure it will work on the new Intel Powermacs yet. Mark I think that the FX4500 is the on

[PyMOL] PowerbookG4 z-screen stereoenabler

2006-09-28 Thread Florian Nachon
Dear all, I was using stereo on a SGI octane2 but would like to switch to my powerbook G4. I did not find good help neither in google nor in this list, to make it work. The powerbook G4 runs tiger (10.4.7) and has a ATI mobility Radeon 9600 graphic card. I got the Mac stereoenabler fro