Re: [PyMOL] apbs plugin in pymol

2006-11-23 Thread Andrea Spitaleri
Hi, at this purpose, what kind of range (positive - negative) should be used in order to visualize correctly the potential surface on a protein? Normally I used -10 to +10 but I am wondering how you behaves with this issue too. Thanks in advance andrea 2006/11/23, D. Eric Dollins : Florian, I

Re: [PyMOL] apbs plugin in pymol

2006-11-23 Thread D. Eric Dollins
Florian, I had the same problem and I couldnt get everything to work internally in pymol. I never got pymol to write the *.pqr files. I couldn't figure it out. However, you can give your pdb to the PDB2PQR server: http://agave.wustl.edu/pdb2pqr/server.html Strip the waters/ligands and load in your