Re: [PyMOL] morphing between complexes

2006-11-28 Thread Nat Echols
unfortunately I've already tried that server and I've seen that also in that case, the ligand is stripped out.I obtain movies with only the protein movements. I don't know if i have problems with my pdbs: I have 245 residues + 1 ligand (246). it has the ATOM and not the HETATM indication, could be

Re: [PyMOL] morphing between complexes

2006-11-28 Thread andrea carotti
Il giorno mar, 28/11/2006 alle 11.22 -0500, matthew.frank...@imclone.com ha scritto: > > Dear Andrea - > > You should try using the Gerstein Morph Server: > http://www.molmovdb.org/molmovdb/morph/ > > The core algorithm uses CNS, so if your structure is parsed properly by > CNS, it should emerg

Re: [PyMOL] morphing between complexes

2006-11-28 Thread Matthew . Franklin
pymol-users-boun...@lists.sourceforge.net wrote on 11/28/2006 05:25:15 AM: > Hi all, > I'm new to this list and I'm a newbie of Pymol. > I'm trying to do some morphing movies between different complexes (same > protein but different ligands). I'm having troubles cause the morphed > structures (p

[PyMOL] morphing between complexes

2006-11-28 Thread andrea carotti
Hi all, I'm new to this list and I'm a newbie of Pymol. I'm trying to do some morphing movies between different complexes (same protein but different ligands). I'm having troubles cause the morphed structures (pdbs generated by lsqman (procedure taken by this page http://ginsberg.med.virginia.edu/~