Frieda,
Bill Scott has posted some additional information on X11 for Mac OS X that
might be useful:
>> I've put links to the various older X11 installs on this
>> page, right- hand side:
>>
>> http://xanana.ucsc.edu/xtal/x11.html
>>
>> If a user needs to clean stuff up, deletion of /usr/X11R
Hey Gary,
in order to have sidechains be attached to your cartoon representation, the
cartoons must not be smoothened.
set cartoon_flat_sheets, off
will do that. Be warned that your sheets will look like the ocean beyond
the reef of Tunnels beach.
To get just a sidechain, type
show sticks, sele
Hi,
I have read the manual on how to have a cartoon representation of a protein
and have one or more sidechains visible "and" connected to the ribbon
(versus floating in space, see pg 39 manual). But I can not get that to
happen following the instructions (using GUI or command line). Also, how d
Thanks, this sounds do-able at some point. It will take me a few days
to get to this. In the meantime, if someone knows of another
solution, I'm all ears...
BTW, if I can access a Windows machine, is this an easier process? On
the "Obtain" web page, there seems to be only one Win (complied)
Hi Frieda,
You need to install both X11User and X11SDK packages.
more over you need to start X11 before opening any X11
applications.
Hope this helps
Raj
--- DeLano Scientific wrote:
> Frieda,
>
> We too have experienced problems ourselves
> attempting to install X11 on
> Macintosh computers
Marco,
Maybe you could replace (alter) the B-factor of your protein with the
electrostatic values, and color it accordingly; some googling should
give you more hints about how you could solve this issue, like
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/data2bfactor.py
and
http://pldserver
