Re: [PyMOL] protein cartoon/floating sidechains/ligands

2007-03-07 Thread Tsjerk Wassenaar
Hey, In addition, you may also want to set cartoon_smooth_loops,0 in order to have your loops nice and wiggly, attaching to your side-chains. Cheers, Tsjerk On 3/6/07, Andreas Forster docandr...@gmail.com wrote: Hey Gary, in order to have sidechains be attached to your cartoon

[PyMOL] cyclic structures

2007-03-07 Thread jkulpiii
This question has appeared a few times in the mailing list yet I could not find any answer (maybe I missed it). http://sourceforge.net/mailarchive/message.php?msg_id=10556819 http://sourceforge.net/mailarchive/message.php?msg_id=36990895 Basically, in cyclic structures there is a

Re: [PyMOL] cyclic structures

2007-03-07 Thread DeLano Scientific
Unfortunately, this is not something PyMOL can do at present, and we were not able to come up with a workaround previously. In short, the code needs to be modified at a fundamental level, but the cartoon generator in PyMOL is about as bad as it gets: deeply nested code, 1-2 letter variables