Re: [PyMOL] Mesh object features

2007-04-17 Thread Tsjerk Wassenaar
Hi Giacomo, If you type 'set meshtab', you'll get a listing of the mesh-related settings. With get mesh_something, you'll get the current (default) value. Best, Tsjerk On 4/17/07, Giacomo Bastianelli gbast...@pasteur.fr wrote: Dear Users, I would like to change (using the API Pymol

Re: [PyMOL] distances and selections within states?

2007-04-17 Thread DeLano Scientific
Find me the distance between atom1 and atom2 in state 4 print cmd.get_distance(atom1,atom2,4) select all waters that are within 5.0 angstroms of residue 15 during state 7 Hmm...not easily done. The problem is that distance-based selection criteria apply to all states, giving you a superset

[PyMOL] Surface vertex list

2007-04-17 Thread jjv5
Hello, Is there a way to access the individual vertices of a surface abd there association with atoms? I know it's done under the hood, but can I write some code that say returns a list of surface vertices associated with a particular atom? In the end, I'd like to know if two atoms share a