Re: [PyMOL] Surface vertex list

2007-04-19 Thread Tsjerk Wassenaar
Hi Jim, Hmmm. I think your best option is to color the surface according to the atoms and write the surface in povray format. This will give you all the vertices. Just another thought springing to mind, you could cycle over the atoms using a script, writing away only the part of the surface belon

Re: [PyMOL] Showing periodic images

2007-04-19 Thread Tsjerk Wassenaar
Hi Gianluca, Unfortunately, Pymol offers no such functionality intrinsically. But this is where python comes in handy. Attached you find a script I wrote for the purpose. It allows you to shift objects or selections over the periodic lattice: run lattice.py create ObjectCopy,MyObject shift 1,0,0

[PyMOL] Showing periodic images

2007-04-19 Thread Gianluca Santarossa
Dear all, is there a way to show the periodic images from a slab in PyMOL? Thanks, Gianluca -- == Gianluca Santarossa Institute for Chemical and Bioengineering Department of Chemistry and Applied Biosciences ETH Zurich, Hönggerberg, HCI,